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arvados-tutorial.git
2021-01-14 Jiayong LiAdd comments on the chr19 only yml 17049-make-singlechrom | commitdiff
2020-12-28 Jiayong LiAdd chr19 yml by changing fullintervallist | commitdiff
2020-12-15 Jiayong LiAdd workflow to generate single chromosome fastqs | commitdiff
2020-08-13 Sarah Wait Zaranekupdating yml | commitdiff
2020-07-27 Sarah Wait ZaranekUpdating yml for 2 vcfs of known sites | commitdiff
2020-07-27 Sarah Wait ZaranekFixing labels for knownsites | commitdiff
2020-07-27 Sarah Wait ZaranekUpdating to allow for two vcfs of known sites | commitdiff
2020-07-23 Sarah Wait ZaranekUpdating cwl and yml for intervals and other changes | commitdiff
2020-07-14 Sarah Wait ZaranekUpdating HTML edam comments | commitdiff
2020-07-12 Sarah Wait ZaranekUpdating comments | commitdiff
2020-07-12 Sarah Wait ZaranekFixing edam reference | commitdiff
2020-07-10 Sarah Wait ZaranekMoving # | commitdiff
2020-07-07 Sarah Wait ZaranekUpdating docker reference | commitdiff
2020-07-07 Sarah Wait ZaranekUpdating bwa-samtools dockerfile | commitdiff
2020-07-07 Sarah Wait ZaranekAdding more formats to yml | commitdiff
2020-07-07 Sarah Wait ZaranekUpdating yml for formats | commitdiff
2020-07-03 Sarah Wait ZaranekRemoving initial work dir requirement when not needed | commitdiff
2020-07-03 Sarah Wait ZaranekUpdating yml files | commitdiff
2020-07-03 Sarah Wait ZaranekUpdating yml files | commitdiff
2020-07-02 Sarah Wait ZaranekRemoving white spaces and commenting out schemas | commitdiff
2020-07-02 Sarah Wait ZaranekRemoving white space and commenting out schemas | commitdiff
2020-07-02 Sarah Wait ZaranekMoving fastqc into not in use for docker containers | commitdiff
2020-07-02 Sarah Wait ZaranekRemoving white spaces and commenting schemas | commitdiff
2020-07-02 Sarah Wait ZaranekUpdating for new Docker containter | commitdiff
2020-07-01 Sarah Wait ZaranekAdding links about CWL to the readme | commitdiff
2020-07-01 Sarah Wait ZaranekSwitching variable knownsites1 to knownsites in yml... | commitdiff
2020-07-01 Sarah Wait ZaranekSwitching variable knownsites1 to knownsites | commitdiff
2020-07-01 Sarah Wait ZaranekUpdating report generation code | commitdiff
2020-07-01 Sarah Wait ZaranekUpdating yml to include intervals | commitdiff
2020-07-01 Sarah Wait ZaranekAdding metatdata and labels | commitdiff
2020-07-01 Sarah Wait ZaranekAdding metadata, updating variables | commitdiff
2020-07-01 Sarah Wait ZaranekAdding metadata | commitdiff
2020-07-01 Sarah Wait ZaranekAdding metadata and step renaming | commitdiff
2020-07-01 Sarah Wait Zaranekupdating metadata | commitdiff
2020-06-29 Sarah Wait Zaranekupdating for metadata and yml to check command line cwl | commitdiff
2020-06-26 Sarah Wait ZaranekAdding labels and metadata | commitdiff
2020-06-26 Sarah Wait ZaranekAdding arv to namespace | commitdiff
2020-06-26 Sarah Wait ZaranekAdding labels and other metadata | commitdiff
2020-06-25 Sarah Wait Zaranekremoving swp file | commitdiff
2020-06-25 Sarah Wait ZaranekAdding labels and metadata | commitdiff
2020-06-25 Sarah Wait ZaranekUpdating labels and metadata | commitdiff
2020-06-25 Sarah Wait ZaranekEven more formatting | commitdiff
2020-06-25 Sarah Wait ZaranekFixing formating issue | commitdiff
2020-06-25 Sarah Wait ZaranekAdding Arvados info to readme | commitdiff
2020-06-25 Sarah Wait Zaranekreorg of yml files | commitdiff
2020-06-25 Sarah Wait ZaranekUpdataing readme and yml files | commitdiff
2020-06-25 Sarah Wait ZaranekUpdating labels | commitdiff
2020-06-25 Sarah Wait ZaranekAdding more labels | commitdiff
2020-06-24 Sarah Wait ZaranekAdding more labels/metadata | commitdiff
2020-06-24 Sarah Wait ZaranekAdding labels and other annotations | commitdiff
2020-06-24 Sarah Wait ZaranekUpdating labels and hints on cwl | commitdiff
2020-06-24 Sarah Wait ZaranekAdding labels | commitdiff
2020-06-24 Sarah Wait ZaranekAdding labels and formats to cwl | commitdiff
2020-06-23 Sarah Wait ZaranekUpdating main cwl workflow | commitdiff
2020-06-23 Sarah Wait ZaranekAdding license info to cwl | commitdiff
2020-06-23 Sarah Wait ZaranekAdding changes to Dockerfiles | commitdiff
2020-06-23 Sarah Wait ZaranekUpdating docker file for fastqc | commitdiff
2020-06-23 Sarah Wait ZaranekUpdating clinvar report docker file and reorganizing... | commitdiff
2020-06-19 Sarah Wait ZaranekUpdating readme | commitdiff
2020-06-19 Sarah Wait ZaranekUpdating licenseignore | commitdiff
2020-06-19 Sarah Wait ZaranekMoving license location | commitdiff
2020-06-19 Sarah Wait ZaranekAdding license and licenseignore | commitdiff
2020-06-19 Sarah Wait ZaranekUpdating readme | commitdiff
2020-06-19 Sarah Wait ZaranekMoving readme to markdown | commitdiff
2020-06-18 Sarah Wait ZaranekUpdating not-in-use directory | commitdiff
2020-06-18 Sarah Wait ZaranekUpdating dockerfiles | commitdiff
2020-06-18 Sarah Wait Zaranekremoving un-needed yml | commitdiff
2020-06-18 Sarah Wait Zaranekcleaning up src files | commitdiff
2020-06-18 Sarah Wait ZaranekUpdating readme and reorganization | commitdiff
2020-06-18 Sarah Wait ZaranekUpdating links to "helper" cwl | commitdiff
2020-06-18 Sarah Wait ZaranekAdd scatter wf for overall scatter | commitdiff
2020-06-18 Sarah Wait ZaranekAdding readme and clean up | commitdiff
2020-06-18 Sarah Wait ZaranekRearranging for clarity | commitdiff
2020-06-18 Sarah Wait Zaranekremoving src code not in use | commitdiff
2020-06-18 Sarah Wait Zaranekyml to get fastq from directory | commitdiff
2020-06-18 Sarah Wait ZaranekAdding code to get fastqs from directory | commitdiff
2020-06-18 Sarah Wait Zaranekupdating yml | commitdiff
2020-06-18 Sarah Wait ZaranekAdding modified code to select variants and gather... | commitdiff
2020-06-18 Sarah Wait ZaranekAdding files for gathering gvcfs and cleaning gvcfs | commitdiff
2020-06-18 Sarah Wait ZaranekAdding yml files for gathering and intervals | commitdiff
2020-06-18 Sarah Wait ZaranekAdding gather cwls | commitdiff
2020-06-18 Sarah Wait Zaranekadding helper directory for structure, may reorg later | commitdiff
2020-06-18 Sarah Wait Zaranekadding base recalibrator yml and updating bwamem yml | commitdiff
2020-06-18 Sarah Wait ZaranekUpdating bwamem CWL and adding base recalibrator cwl | commitdiff
2020-06-18 Sarah Wait Zaranekremoving unnecessary step, renaming cwl file | commitdiff
2020-06-18 Sarah Wait Zaranekupdating yml to include UK pgp example | commitdiff
2020-06-18 Sarah Wait Zaranekupdating cwl | commitdiff
2020-06-18 Sarah Wait Zaranekupdating dockerfiles | commitdiff
2020-06-18 Sarah Wait Zaranekupdating yml | commitdiff
2020-06-18 Sarah Wait ZaranekUpdating annotation and gatk code | commitdiff
2020-06-18 Sarah Wait Zaranekupdating preprocessing code | commitdiff
2020-06-18 Sarah Wait ZaranekAdding ploidy code | commitdiff
2020-06-18 Sarah Wait ZaranekUpdating yml | commitdiff
2020-06-18 Sarah Wait ZaranekUpdating CWL for overarching workflow | commitdiff
2020-06-18 Sarah Wait Zaranekcleaning up src directory and updating head.html | commitdiff
2020-06-18 Sarah Wait ZaranekAdding cwl to convert gvcf to vcf | commitdiff
2020-06-18 Sarah Wait ZaranekUpdating cwl | commitdiff
2020-06-18 Sarah Wait ZaranekAdding cwl to annotate and generate report | commitdiff
2020-02-27 Sarah Wait ZaranekUpdating files | commitdiff
2020-02-27 Sarah Wait ZaranekMerge branch 'master' of git.arvados.org:arvados-tutorial | commitdiff
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