Workflows are written in CWL v1.1.
+Subdirectories are:
+cwl - contains CWL code for the demo
+yml - contains yml inputs for cwl demo code
+src - contains any src code for the demo
+docker - contains dockerfiles necessary to re-create any needed docker images
+
To run the workflow:
1. cd into cwl directory
2. run the following:
arvados-cwl-runner --no-wait --project-uuid YOUR_PROJECT_UUID wgs-processing-wf.cwl ../yml/YOURINPUTS.yml
-Subdirectories are:
-cwl - contains CWL code for the demo
-yml - contains yml inputs for cwl demo code
-src - contains any src code for the demo
-docker - contains dockerfiles necessary to re-create any needed docker images
-
About the Demo Data:
WGS Data used in this demo is public data made available by the Personal Genome Project. This data is from the PGP-UK (https://www.personalgenomes.org.uk/).
+++ /dev/null
-reference:
- class: File
- location: keep:a3af04432df3d71d22f2fe8be549ba96+5974/hg38.fa
-sample: ERR1726424
-gvcf1:
- class: File
- location: keep:dec5da8ebcda12b3eece8705a4391f55+2510/ERR1726424.gatk.g.vcf.gz
-
-gvcf2:
- class: File
- location: keep:054cb90cfb20dedb862af1fdd636ad3f+297/ERR1726424_10.gatk.g.vcf.gz
-
-