Updating HTML edam comments

Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #

diff --git a/WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl b/WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl
index ea5b93b53224b3cdf7b79dfab25c8d8a7351657c..522bd822cdbd7178a9c1f8ee9028ca0a5cf86137 100644 (file)
--- a/WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl
+++ b/WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl
@@ -47,18 +47,18 @@ inputs:
     label: Function used to create HTML report
   headhtml:
     type: File
-    format: edam:format_1964 # HTML
+    format: edam:format_2331 # HTML
     label: Header for HTML report
   tailhtml:
     type: File
-    format: edam:format_1964 # HTML
+    format: edam:format_2331 # HTML
     label: Footer for HTML report
 
 outputs:
   qc-html:
     type: File[]
     label: FASTQ QC reports
-    format: edam:format_1964 # HTML
+    format: edam:format_2331 # HTML
     outputSource: fastqc/out-html
   qc-zip:
     type: File[]
@@ -72,7 +72,7 @@ outputs:
   report:
     type: File  
     outputSource: generate-report/report
-    format: edam:format_1964 # HTML
+    format: edam:format_2331 # HTML
     label: ClinVar variant report
 
 steps:

diff --git a/WGS-processing/cwl/helper/fastqc.cwl b/WGS-processing/cwl/helper/fastqc.cwl
index 30193a12a3a27225ee56ff28dc071e5184fc57d6..70cdc7604172850a98674681d71de982b9ca0306 100644 (file)
--- a/WGS-processing/cwl/helper/fastqc.cwl
+++ b/WGS-processing/cwl/helper/fastqc.cwl
@@ -27,7 +27,7 @@ outputs:
   out-html:
     type: File[]
     label: FASTQ QC reports
-    format: edam:format_1964 # HTML
+    format: edam:format_2331 # HTML
     outputBinding:
       glob: "*html"
   out-zip:

diff --git a/WGS-processing/cwl/helper/generate-report.cwl b/WGS-processing/cwl/helper/generate-report.cwl
index 67bf19d0bb4f436eff95e3d86e83bea3f5c06dfe..3773f7d7aa2289ad940ba3fc99a56762043e8e28 100644 (file)
--- a/WGS-processing/cwl/helper/generate-report.cwl
+++ b/WGS-processing/cwl/helper/generate-report.cwl
@@ -23,7 +23,7 @@ inputs:
     label: Sample Name
   headhtml:
     type: File
-    format: edam:format_2331# HTML
+    format: edam:format_2331 # HTML
     label: Header for HTML report
   tailhtml:
     type: File
@@ -33,7 +33,7 @@ inputs:
 outputs:
   report:
     type: File
-    format: edam:format_1964 # HTML
+    format: edam:format_2331 # HTML
     label: ClinVar variant report
     outputBinding:
       glob: "*html"

diff --git a/WGS-processing/cwl/helper/report-wf.cwl b/WGS-processing/cwl/helper/report-wf.cwl
index 296e199d3408d9cef89962a63a35e661b86774a0..9e675ff81e6408446c66bdc056040d3169b39d25 100644 (file)
--- a/WGS-processing/cwl/helper/report-wf.cwl
+++ b/WGS-processing/cwl/helper/report-wf.cwl
@@ -19,7 +19,7 @@ inputs:
     label: Function used to create HTML report
   headhtml:
     type: File
-    format: edam:format_2331# HTML
+    format: edam:format_2331 # HTML
     label: Header for HTML report
   tailhtml:
     type: File
@@ -29,7 +29,7 @@ inputs:
 outputs:
   report:
     type: File
-    format: edam:format_1964 # HTML
+    format: edam:format_2331 # HTML
     label: ClinVar variant report
     outputSource: generate-report/report