git.arvados.org - arvados-tutorial.git/commit

projects / arvados-tutorial.git / commit

author	Sarah Wait Zaranek <swz@curii.com>
	Thu, 25 Jun 2020 13:06:46 +0000 (13:06 +0000)
committer	Sarah Wait Zaranek <swz@curii.com>
	Thu, 25 Jun 2020 13:06:46 +0000 (13:06 +0000)
commit	f46aac417fb5b8b3d3db810b9a62e94571765f77
tree	d62113833171673c8aabaf56041f1b4df901c9f8	tree \| snapshot
parent	974a6542eec937b12f7c78c308cd5dd4deee521f	commit \| diff

reorg of yml files
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #

27 files changed:

WGS-processing/yml/helper/annotate-vcf.yml	[moved from WGS-processing/yml/annotate-vcf.yml with 100% similarity]	blob \| history
WGS-processing/yml/helper/bwamem-gatk-report-wf.yml	[moved from WGS-processing/yml/bwamem-gatk-report-wf.yml with 100% similarity]	blob \| history
WGS-processing/yml/helper/bwamem-samtools-sort.yml	[moved from WGS-processing/yml/bwamem-samtools-sort.yml with 100% similarity]	blob \| history
WGS-processing/yml/helper/bwamem-samtools-view.yml	[moved from WGS-processing/yml/bwamem-samtools-view.yml with 100% similarity]	blob \| history
WGS-processing/yml/helper/fastqc.yml	[moved from WGS-processing/yml/fastqc.yml with 100% similarity]	blob \| history
WGS-processing/yml/helper/gather-vcf.yml	[moved from WGS-processing/yml/gather-vcf.yml with 100% similarity]	blob \| history
WGS-processing/yml/helper/gatk-applyBQSR.yml	[moved from WGS-processing/yml/gatk-applyBQSR.yml with 100% similarity]	blob \| history
WGS-processing/yml/helper/gatk-baserecalibrator.yml	[moved from WGS-processing/yml/gatk-baserecalibrator.yml with 100% similarity]	blob \| history
WGS-processing/yml/helper/gatk-haplotypecaller-with-interval.yml	[moved from WGS-processing/yml/gatk-haplotypecaller-with-interval.yml with 100% similarity]	blob \| history
WGS-processing/yml/helper/gatk-haplotypecaller.yml	[moved from WGS-processing/yml/gatk-haplotypecaller.yml with 100% similarity]	blob \| history
WGS-processing/yml/helper/gatk-selectvariants.yml	[moved from WGS-processing/yml/gatk-selectvariants.yml with 100% similarity]	blob \| history
WGS-processing/yml/helper/gatk-splitintervals.yml	[moved from WGS-processing/yml/gatk-splitintervals.yml with 100% similarity]	blob \| history
WGS-processing/yml/helper/gatk-wf-with-interval.yml	[moved from WGS-processing/yml/gatk-wf-with-interval.yml with 100% similarity]	blob \| history
WGS-processing/yml/helper/generate-report.yml	[moved from WGS-processing/yml/generate-report.yml with 100% similarity]	blob \| history
WGS-processing/yml/helper/getfastq.yml	[moved from WGS-processing/yml/getfastq.yml with 100% similarity]	blob \| history
WGS-processing/yml/helper/getgvcfs.yml	[moved from WGS-processing/yml/getgvcfs.yml with 100% similarity]	blob \| history
WGS-processing/yml/helper/gvcf-to-vcf.yml	[moved from WGS-processing/yml/gvcf-to-vcf.yml with 100% similarity]	blob \| history
WGS-processing/yml/helper/mark-duplicates.yml	[moved from WGS-processing/yml/mark-duplicates.yml with 100% similarity]	blob \| history
WGS-processing/yml/helper/report-wf.yml	[moved from WGS-processing/yml/report-wf.yml with 100% similarity]	blob \| history
WGS-processing/yml/helper/samtools-index.yml	[moved from WGS-processing/yml/samtools-index.yml with 100% similarity]	blob \| history
WGS-processing/yml/helper/samtools-sort.yml	[moved from WGS-processing/yml/samtools-sort.yml with 100% similarity]	blob \| history
WGS-processing/yml/helper/scatter-gatk-wf-with-interval.yml	[moved from WGS-processing/yml/scatter-gatk-wf-with-interval.yml with 100% similarity]	blob \| history
WGS-processing/yml/not-in-use/bwa-gatk-wf-WGC071838D.yml	[deleted file]	blob \| history
WGS-processing/yml/not-in-use/bwa-gatk-wf-WGC074701D.yml	[deleted file]	blob \| history
WGS-processing/yml/not-in-use/bwa-gatk-wf-chr19.yml	[deleted file]	blob \| history
WGS-processing/yml/not-in-use/bwa-gatk-wf-report.yml	[deleted file]	blob \| history
WGS-processing/yml/not-in-use/bwa-gatk-wf.yml	[deleted file]	blob \| history

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