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(parent: e765e41) | patch
adding helper directory for structure, may reorg later
authorSarah Wait Zaranek <swz@curii.com>
Fri, 8 May 2020 07:42:30 +0000 (07:42 +0000)
committerWard Vandewege <ward@jhvc.com>
Thu, 18 Jun 2020 15:16:40 +0000 (11:16 -0400)
commitcc2f0d302b6f536f680a8459b12ec9972c9507ff
treef08b6877b14404ac79b8c45be9103e5d03fa9cc3tree | snapshot
parente765e4108a00e88c4738908835baff52e4abb54acommit | diff
adding helper directory for structure, may reorg later
adding cwl to do intervals and scattering
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
26 files changed:
cwl/helper/annotate-vcf.cwl [moved from cwl/annotate-vcf.cwl with 100% similarity] blob | history
cwl/helper/bwa-gatk-wf.cwl [moved from cwl/bwa-gatk-wf.cwl with 100% similarity] blob | history
cwl/helper/bwamem-samtools-sort.cwl [moved from cwl/bwamem-samtools-sort.cwl with 100% similarity] blob | history
cwl/helper/bwamem-samtools-view.cwl [moved from cwl/bwamem-samtools-view-org.cwl with 100% similarity] blob | history
cwl/helper/calc-coverage.cwl [moved from cwl/calc-coverage.cwl with 100% similarity] blob | history
cwl/helper/check-sam.cwl [moved from cwl/check-sam.cwl with 100% similarity] blob | history
cwl/helper/fastqc.cwl [moved from cwl/fastqc.cwl with 100% similarity] blob | history
cwl/helper/fix-groups.cwl [moved from cwl/fix-groups.cwl with 100% similarity] blob | history
cwl/helper/gatk-applyBQSR.cwl [new file with mode: 0644] blob
cwl/helper/gatk-applyBSQR-with-interval.cwl [new file with mode: 0644] blob
cwl/helper/gatk-baserecalibrator-with-interval.cwl [new file with mode: 0644] blob
cwl/helper/gatk-baserecalibrator.cwl [moved from cwl/gatk-baserecalibrator.cwl with 97% similarity] diff | blob | history
cwl/helper/gatk-haplotypecaller-with-interval.cwl [new file with mode: 0644] blob
cwl/helper/gatk-haplotypecaller.cwl [moved from cwl/gatk-haplotypecaller.cwl with 100% similarity] blob | history
cwl/helper/gatk-splitintervals.cwl [new file with mode: 0644] blob
cwl/helper/gatk-wf-with-interval.cwl [new file with mode: 0644] blob
cwl/helper/generate-report.cwl [moved from cwl/generate-report.cwl with 100% similarity] blob | history
cwl/helper/gvcf-to-vcf.cwl [moved from cwl/gvcf-to-vcf.cwl with 100% similarity] blob | history
cwl/helper/mark-duplicates.cwl [moved from cwl/mark-duplicates.cwl with 100% similarity] blob | history
cwl/helper/old/bwa-gatk-wf.cwl [moved from cwl/old/bwa-gatk-wf.cwl with 100% similarity] blob | history
cwl/helper/old/samtools-sort.cwl [moved from cwl/old/samtools-sort.cwl with 100% similarity] blob | history
cwl/helper/report-wf.cwl [moved from cwl/report-wf.cwl with 100% similarity] blob | history
cwl/helper/samtools-fixmate.cwl [moved from cwl/samtools-fixmate.cwl with 100% similarity] blob | history
cwl/helper/samtools-index.cwl [moved from cwl/samtools-index.cwl with 94% similarity] diff | blob | history
cwl/helper/samtools-sort.cwl [moved from cwl/samtools-sort.cwl with 95% similarity] diff | blob | history
cwl/helper/scatter-gatk-wf-with-interval.cwl [new file with mode: 0644] blob