3 label: Creating interval files for scattering
6 arv: "http://arvados.org/cwl#"
7 cwltool: "http://commonwl.org/cwltool#"
11 dockerPull: broadinstitute/gatk:4.1.7.0
14 arv:RuntimeConstraints:
15 outputDirType: keep_output_dir
39 glob: "intervalfiles/*.interval_list"
41 baseCommand: /gatk/gatk
48 valueFrom: $(inputs.reference)
49 - prefix: "--scatter-count"
50 valueFrom: $(inputs.scattercount)
51 - prefix: "--subdivision-mode"
52 valueFrom: "BALANCING_WITHOUT_INTERVAL_SUBDIVISION"
54 valueFrom: "intervalfiles"