adding helper directory for structure, may reorg later

[arvados-tutorial.git] / cwl / helper / gatk-baserecalibrator.cwl

diff --git a/cwl/gatk-baserecalibrator.cwl b/cwl/helper/gatk-baserecalibrator.cwl
similarity index 97%
rename from cwl/gatk-baserecalibrator.cwl
rename to cwl/helper/gatk-baserecalibrator.cwl
index a5105e8a692924741573e54c09c05d82415a9cf7..7a788ba0dd53e31123b4f7136857071a341887a8 100644 (file)
--- a/cwl/gatk-baserecalibrator.cwl
+++ b/cwl/helper/gatk-baserecalibrator.cwl
@@ -24,6 +24,8 @@ hints:
 inputs:
   bam:
     type: File
+    secondaryFiles:
+      - .bai
   reference:
     type: File
     secondaryFiles: