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arvados-tutorial.git
2024-11-08 Peter AmstutzRemove keep_cache parameters because they are no longer... wgs-no-keep-cache commit | commitdiff | tree | snapshot
2024-11-08 Peter AmstutzBump fastq version commit | commitdiff | tree | snapshot
2024-11-08 Peter Amstutzfix fastqc commit | commitdiff | tree | snapshot
2022-12-22 Peter AmstutzUse 16 cores for bwa commit | commitdiff | tree | snapshot
2022-12-07 Peter AmstutzComment out keep_cache to test performance of new disk... commit | commitdiff | tree | snapshot
2022-09-15 Peter AmstutzAdd splitDir to take Directory input commit | commitdiff | tree | snapshot
2022-09-15 swzUpdating for proper loadListing commit | commitdiff | tree | snapshot
2022-09-15 swzUpdating to take a directory commit | commitdiff | tree | snapshot
2022-09-15 swzMoving to directory commit | commitdiff | tree | snapshot
2022-09-15 swzAdding helper files and updating readme commit | commitdiff | tree | snapshot
2022-09-15 swzAdding RNA-Seq demo commit | commitdiff | tree | snapshot
2021-12-07 Ward VandewegeMerge branch 'blog-examples' commit | commitdiff | tree | snapshot
2021-11-30 Ward VandewegeAdd the star-index example for the debugging blog post. blog-examples commit | commitdiff | tree | snapshot
2021-11-30 Ward Vandewege18178: Final tweaks to the debugging blog post CWL. commit | commitdiff | tree | snapshot
2021-11-30 Sarah Wait... Updating fastq commit | commitdiff | tree | snapshot
2021-10-26 Peter AmstutzLower RAM request by bwa to run on 9tee4 commit | commitdiff | tree | snapshot
2021-10-26 Peter AmstutzBugfix .bai secondary file for ApplyBSQR behavior commit | commitdiff | tree | snapshot
2021-01-14 Jiayong LiMerge branch '17049-make-singlechrom' commit | commitdiff | tree | snapshot
2021-01-14 Jiayong LiAdd comments on the chr19 only yml 17049-make-singlechrom commit | commitdiff | tree | snapshot
2020-12-28 Jiayong LiAdd chr19 yml by changing fullintervallist commit | commitdiff | tree | snapshot
2020-12-15 Jiayong LiAdd workflow to generate single chromosome fastqs commit | commitdiff | tree | snapshot
2020-08-13 Sarah Wait... updating yml commit | commitdiff | tree | snapshot
2020-07-27 Sarah Wait... Updating yml for 2 vcfs of known sites commit | commitdiff | tree | snapshot
2020-07-27 Sarah Wait... Fixing labels for knownsites commit | commitdiff | tree | snapshot
2020-07-27 Sarah Wait... Updating to allow for two vcfs of known sites commit | commitdiff | tree | snapshot
2020-07-23 Sarah Wait... Updating cwl and yml for intervals and other changes commit | commitdiff | tree | snapshot
2020-07-14 Sarah Wait... Updating HTML edam comments commit | commitdiff | tree | snapshot
2020-07-12 Sarah Wait... Updating comments commit | commitdiff | tree | snapshot
2020-07-12 Sarah Wait... Fixing edam reference commit | commitdiff | tree | snapshot
2020-07-10 Sarah Wait... Moving # commit | commitdiff | tree | snapshot
2020-07-07 Sarah Wait... Updating docker reference commit | commitdiff | tree | snapshot
2020-07-07 Sarah Wait... Updating bwa-samtools dockerfile commit | commitdiff | tree | snapshot
2020-07-07 Sarah Wait... Adding more formats to yml commit | commitdiff | tree | snapshot
2020-07-07 Sarah Wait... Updating yml for formats commit | commitdiff | tree | snapshot
2020-07-03 Sarah Wait... Removing initial work dir requirement when not needed commit | commitdiff | tree | snapshot
2020-07-03 Sarah Wait... Updating yml files commit | commitdiff | tree | snapshot
2020-07-03 Sarah Wait... Updating yml files commit | commitdiff | tree | snapshot
2020-07-02 Sarah Wait... Removing white spaces and commenting out schemas commit | commitdiff | tree | snapshot
2020-07-02 Sarah Wait... Removing white space and commenting out schemas commit | commitdiff | tree | snapshot
2020-07-02 Sarah Wait... Moving fastqc into not in use for docker containers commit | commitdiff | tree | snapshot
2020-07-02 Sarah Wait... Removing white spaces and commenting schemas commit | commitdiff | tree | snapshot
2020-07-02 Sarah Wait... Updating for new Docker containter commit | commitdiff | tree | snapshot
2020-07-01 Sarah Wait... Adding links about CWL to the readme commit | commitdiff | tree | snapshot
2020-07-01 Sarah Wait... Switching variable knownsites1 to knownsites in yml... commit | commitdiff | tree | snapshot
2020-07-01 Sarah Wait... Switching variable knownsites1 to knownsites commit | commitdiff | tree | snapshot
2020-07-01 Sarah Wait... Updating report generation code commit | commitdiff | tree | snapshot
2020-07-01 Sarah Wait... Updating yml to include intervals commit | commitdiff | tree | snapshot
2020-07-01 Sarah Wait... Adding metatdata and labels commit | commitdiff | tree | snapshot
2020-07-01 Sarah Wait... Adding metadata, updating variables commit | commitdiff | tree | snapshot
2020-07-01 Sarah Wait... Adding metadata commit | commitdiff | tree | snapshot
2020-07-01 Sarah Wait... Adding metadata and step renaming commit | commitdiff | tree | snapshot
2020-07-01 Sarah Wait... updating metadata commit | commitdiff | tree | snapshot
2020-06-29 Sarah Wait... updating for metadata and yml to check command line cwl commit | commitdiff | tree | snapshot
2020-06-26 Sarah Wait... Adding labels and metadata commit | commitdiff | tree | snapshot
2020-06-26 Sarah Wait... Adding arv to namespace commit | commitdiff | tree | snapshot
2020-06-26 Sarah Wait... Adding labels and other metadata commit | commitdiff | tree | snapshot
2020-06-25 Sarah Wait... removing swp file commit | commitdiff | tree | snapshot
2020-06-25 Sarah Wait... Adding labels and metadata commit | commitdiff | tree | snapshot
2020-06-25 Sarah Wait... Updating labels and metadata commit | commitdiff | tree | snapshot
2020-06-25 Sarah Wait... Even more formatting commit | commitdiff | tree | snapshot
2020-06-25 Sarah Wait... Fixing formating issue commit | commitdiff | tree | snapshot
2020-06-25 Sarah Wait... Adding Arvados info to readme commit | commitdiff | tree | snapshot
2020-06-25 Sarah Wait... reorg of yml files commit | commitdiff | tree | snapshot
2020-06-25 Sarah Wait... Updataing readme and yml files commit | commitdiff | tree | snapshot
2020-06-25 Sarah Wait... Updating labels commit | commitdiff | tree | snapshot
2020-06-25 Sarah Wait... Adding more labels commit | commitdiff | tree | snapshot
2020-06-24 Sarah Wait... Adding more labels/metadata commit | commitdiff | tree | snapshot
2020-06-24 Sarah Wait... Adding labels and other annotations commit | commitdiff | tree | snapshot
2020-06-24 Sarah Wait... Updating labels and hints on cwl commit | commitdiff | tree | snapshot
2020-06-24 Sarah Wait... Adding labels commit | commitdiff | tree | snapshot
2020-06-24 Sarah Wait... Adding labels and formats to cwl commit | commitdiff | tree | snapshot
2020-06-23 Sarah Wait... Updating main cwl workflow commit | commitdiff | tree | snapshot
2020-06-23 Sarah Wait... Adding license info to cwl commit | commitdiff | tree | snapshot
2020-06-23 Sarah Wait... Adding changes to Dockerfiles commit | commitdiff | tree | snapshot
2020-06-23 Sarah Wait... Updating docker file for fastqc commit | commitdiff | tree | snapshot
2020-06-23 Sarah Wait... Updating clinvar report docker file and reorganizing... commit | commitdiff | tree | snapshot
2020-06-19 Sarah Wait... Updating readme commit | commitdiff | tree | snapshot
2020-06-19 Sarah Wait... Updating licenseignore commit | commitdiff | tree | snapshot
2020-06-19 Sarah Wait... Moving license location commit | commitdiff | tree | snapshot
2020-06-19 Sarah Wait... Adding license and licenseignore commit | commitdiff | tree | snapshot
2020-06-19 Sarah Wait... Updating readme commit | commitdiff | tree | snapshot
2020-06-19 Sarah Wait... Moving readme to markdown commit | commitdiff | tree | snapshot
2020-06-18 Sarah Wait... Updating not-in-use directory commit | commitdiff | tree | snapshot
2020-06-18 Sarah Wait... Updating dockerfiles commit | commitdiff | tree | snapshot
2020-06-18 Sarah Wait... removing un-needed yml commit | commitdiff | tree | snapshot
2020-06-18 Sarah Wait... cleaning up src files commit | commitdiff | tree | snapshot
2020-06-18 Sarah Wait... Updating readme and reorganization commit | commitdiff | tree | snapshot
2020-06-18 Sarah Wait... Updating links to "helper" cwl commit | commitdiff | tree | snapshot
2020-06-18 Sarah Wait... Add scatter wf for overall scatter commit | commitdiff | tree | snapshot
2020-06-18 Sarah Wait... Adding readme and clean up commit | commitdiff | tree | snapshot
2020-06-18 Sarah Wait... Rearranging for clarity commit | commitdiff | tree | snapshot
2020-06-18 Sarah Wait... removing src code not in use commit | commitdiff | tree | snapshot
2020-06-18 Sarah Wait... yml to get fastq from directory commit | commitdiff | tree | snapshot
2020-06-18 Sarah Wait... Adding code to get fastqs from directory commit | commitdiff | tree | snapshot
2020-06-18 Sarah Wait... updating yml commit | commitdiff | tree | snapshot
2020-06-18 Sarah Wait... Adding modified code to select variants and gather... commit | commitdiff | tree | snapshot
2020-06-18 Sarah Wait... Adding files for gathering gvcfs and cleaning gvcfs commit | commitdiff | tree | snapshot
2020-06-18 Sarah Wait... Adding yml files for gathering and intervals commit | commitdiff | tree | snapshot
2020-06-18 Sarah Wait... Adding gather cwls commit | commitdiff | tree | snapshot
2020-06-18 Sarah Wait... adding helper directory for structure, may reorg later commit | commitdiff | tree | snapshot
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