| 2013-12-16 |
Peter Amstutz | Working on traits document |
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| 2013-12-16 |
Tom Clegg | Fix some typos and long lines |
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| 2013-12-16 |
Peter Amstutz | * Fixed links |
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| 2013-12-16 |
Peter Amstutz | Reorganized user manual into sections |
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| 2013-12-16 |
Peter Amstutz | Reorganization, added parallel jobs and new pipeline... |
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| 2013-12-12 |
Peter Amstutz | * Mostly done on "Debug a Crunch Script" |
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| 2013-12-12 |
Peter Amstutz | Merge remote-tracking branch 'origin' into 1495-crunch... |
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| 2013-12-12 |
Peter Amstutz | * split out sections into their own documents |
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| 2013-12-12 |
Tom Clegg | Remove TMP/src.commit too, when removing TMP/src. |
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| 2013-12-12 |
Tom Clegg | Fix left nav link order |
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| 2013-12-12 |
Tom Clegg | Store crunch-job log in a collection instead of just... |
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| 2013-12-12 |
Tom Clegg | Fix gatk_tbz locator. |
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| 2013-12-12 |
Tom Clegg | Revert "Rename annotation DepthOfCoverage to Coverage" |
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| 2013-12-12 |
Tom Clegg | Rename annotation DepthOfCoverage to Coverage |
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| 2013-12-12 |
Tom Clegg | Add input parameter tables and source code link for... |
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| 2013-12-12 |
Tom Clegg | Fix reference to picard source distribution -> binary... |
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| 2013-12-12 |
Tom Clegg | Remove unused module import. |
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| 2013-12-11 |
Tom Clegg | Use git@git.[...] not git://git.[...] as default reposi... |
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| 2013-12-11 |
Peter Amstutz | Formatting tweaks, mosting changing <pre> to textiles... |
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| 2013-12-11 |
Peter Amstutz | Merge branch '1637-improve-arv-tutorial' |
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| 2013-12-11 |
Tim Pierce | Fixed formatting. |
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| 2013-12-11 |
Tim Pierce | Added Keep tutorial (refs #1647) |
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| 2013-12-11 |
Tom Clegg | Add "crunch examples" and "crunch utility libraries... |
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| 2013-12-11 |
Tom Clegg | Clear $CRUNCH_TMP/src when starting a job. |
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| 2013-12-11 |
Tom Clegg | Add GATK2 exome fastq->vcf pipeline example |
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| 2013-12-11 |
Tom Clegg | When running "arv-get -n", it is OK if destination... |
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| 2013-12-10 |
Tom Clegg | Add docstrings to arvados_samtools module. |
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| 2013-12-10 |
Peter Amstutz | Removed numbering and put navorder for tutorial 2 at... |
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| 2013-12-10 |
Peter Amstutz | Missing file |
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| 2013-12-10 |
Peter Amstutz | Cleaned up comments to be hidden from rendered page... |
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| 2013-12-10 |
Peter Amstutz | Cleaned up old files and reorganized navigation order. |
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| 2013-12-10 |
Peter Amstutz | Finished first tutorial. |
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| 2013-12-10 |
Tom Clegg | Merge branch '1646-arv-put' |
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| 2013-12-10 |
Tom Clegg | Point "arv keep get/put" to arv-get/put and unsupport... |
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| 2013-12-10 |
Tom Clegg | Add "Install client libraries" page to doc/install/. |
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| 2013-12-10 |
Tom Clegg | Support invoking arv-get and arv-put via "arv get"... |
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| 2013-12-10 |
Tom Clegg | Add python client library package: arv-get, arv-put... |
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| 2013-12-10 |
Tim Pierce | Fix port flags for "run.sh start". |
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| 2013-12-10 |
Tom Clegg | Rename doc page to match title. |
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| 2013-12-10 |
Tom Clegg | Add "Create standard objects" page in install docs. |
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| 2013-12-10 |
Tom Clegg | Support the use of groups to grant repository permissions. |
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| 2013-12-10 |
Tom Clegg | Clean up arvados_bwa module and add docstrings. |
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| 2013-12-10 |
Tom Clegg | Merge branch 'master' into 1646-arv-put |
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| 2013-12-09 |
Tim Pierce | Merge branch '1587-fix-test-suites-in-devsandbox' |
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| 2013-12-09 |
Tom Clegg | Add arv-get -f (force overwrite) and --skip-existing... |
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| 2013-12-09 |
Tom Clegg | Support "arv-get {locator}/filename path/to/localdir... |
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| 2013-12-09 |
Tom Clegg | Fail gracefully when fetching a raw block that does... |
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| 2013-12-09 |
Tom Clegg | Fail more gracefully on some common error conditions |
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| 2013-12-09 |
Tom Clegg | Use our own exception classes, instead of just Exception |
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| 2013-12-09 |
Tom Clegg | Fix crash when destination directory supplied without... |
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| 2013-12-09 |
Tom Clegg | Use body={...} instead of object_type=json.dumps({... |
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| 2013-12-09 |
Tom Clegg | Add example scripts and libraries for bwa, samtools... |
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| 2013-12-09 |
Peter Amstutz | Merge remote-tracking branch 'origin/master' into 1637... |
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| 2013-12-08 |
Peter Amstutz | A little bit of documentation work from home |
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| 2013-12-06 |
Tim Pierce | Adding 'run.sh test api' to run API server Rails tests. |
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| 2013-12-06 |
Peter Amstutz | Documentation work in progress, making evening check-in. |
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| 2013-12-06 |
Tom Clegg | Ignore config/environments/test.rb and production.rb |
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| 2013-12-06 |
Tom Clegg | Ignore tmp directory created by cli tests |
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| 2013-12-06 |
Tim Pierce | Added 'test' command to run.sh. |
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| 2013-12-05 |
Tim Pierce | run.sh: bug fixes |
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| 2013-12-05 |
Peter Amstutz | Rewriting documentation work in progress. |
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| 2013-12-05 |
Tim Pierce | run.sh: add "stop" command, also remove old containers... |
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| 2013-12-05 |
Tom Clegg | Remove spurious "if". |
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| 2013-12-05 |
Tom Clegg | Use some helpful HTTP status codes, not just generic... |
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| 2013-12-05 |
Tom Clegg | Check permission before deleting objects |
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| 2013-12-05 |
Tim Pierce | Reorganized code to support 'start' command. |
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| 2013-12-05 |
Peter Amstutz | Merge branch 'master' of git.clinicalfuture.com:arvados... |
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| 2013-12-04 |
Tim Pierce | run.sh prints instructions/settings for running a test... |
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| 2013-12-04 |
peter | Notes on new user documentation |
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| 2013-12-04 |
Tim Pierce | Add support for ARVADOS_API_PORT. |
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| 2013-12-04 |
Tim Pierce | Superuser script must be run as ./script/create_superus... |
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| 2013-12-04 |
Tim Pierce | API_SUPERUSER_TOKEN must be named API_SUPERUSER_SECRET... |
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| 2013-12-04 |
Tim Pierce | run.sh bug fixes. |
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| 2013-12-04 |
Tim Pierce | Mount separate volumes for each keep container launched. |
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| 2013-12-04 |
Ward Vandewege | Allow overriding of default ports for API, doc, SSO... |
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| 2013-12-03 |
Tom Clegg | Fix failing test by parsing timestamp correctly. |
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| 2013-12-03 |
Tom Clegg | Fix PermissionDeniedError when a non-admin user is... |
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| 2013-12-03 |
Tim Pierce | Changes to permit keep_server containers to authenticat... |
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| 2013-12-03 |
Tom Clegg | Add arvados.getjobparam() convenience function. |
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| 2013-12-03 |
Tom Clegg | Accept empty string as root stream name "." in |
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| 2013-12-03 |
Tom Clegg | Accept data from a generator in arvados.CollectionWrite... |
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| 2013-12-03 |
Tom Clegg | Sort filenames when writing multi-level streams in |
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| 2013-12-03 |
Tom Clegg | Add arvados.util.clear_tmpdir() function. |
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| 2013-12-03 |
Tom Clegg | Pass through stderr in real time by default in util... |
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| 2013-12-03 |
Tom Clegg | Allow caller to override close_fds in util.run_command() |
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| 2013-12-03 |
Tom Clegg | Use collection hash instead of entire manifest as symli... |
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| 2013-12-03 |
Ward Vandewege | Only require keep volume when a keep container is being... |
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| 2013-12-03 |
Tom Clegg | Improve compatibility with whput. |
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| 2013-12-03 |
Tom Clegg | Fix sha1 test, dry up "remove ./tmp/foo" preparations |
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| 2013-12-03 |
Tom Clegg | Command line usability improvements. |
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| 2013-12-02 |
Tom Clegg | Make the sample "Add authorized key" button non-clickable. |
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| 2013-12-02 |
Tom Clegg | Add delete button to generic Workbench index page. |
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| 2013-12-02 |
Tom Clegg | Remove Rails default scaffold CSS. |
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| 2013-12-01 |
Tom Clegg | Add arv-get, a whget replacement built on the Python... |
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| 2013-11-30 |
Tom Clegg | Add arv-put --as-raw option. |
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| 2013-11-30 |
Tom Clegg | Add CollectionWriter.data_locators() |
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| 2013-11-29 |
Tom Clegg | Add --as-stream test. |
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| 2013-11-28 |
Tom Clegg | Add arv-put, a whput replacement built on the Python... |
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| 2013-11-28 |
Tom Clegg | Show how crunch job tasks get their runtime parameters... |
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| 2013-11-28 |
Tom Clegg | Clear TASK_WORK before starting a task. |
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