Add example scripts and libraries for bwa, samtools, picard, gatk2
authorTom Clegg <tom@clinicalfuture.com>
Mon, 9 Dec 2013 18:25:48 +0000 (10:25 -0800)
committerTom Clegg <tom@clinicalfuture.com>
Mon, 9 Dec 2013 18:25:48 +0000 (10:25 -0800)
commitaa3bb8053f61e550d9cd6da29eaf8644b3898863
treebc3634892924f862f6c889fbd210a9c89c60e874
parent31a83c1da3a220eedd786bc32527134033a328c0
Add example scripts and libraries for bwa, samtools, picard, gatk2

closes #1598
crunch_scripts/GATK2-bqsr [new file with mode: 0755]
crunch_scripts/GATK2-merge-call [new file with mode: 0755]
crunch_scripts/GATK2-realign [new file with mode: 0755]
crunch_scripts/arvados_bwa.py [new file with mode: 0644]
crunch_scripts/arvados_gatk2.py [new file with mode: 0644]
crunch_scripts/arvados_ipc.py [new file with mode: 0644]
crunch_scripts/arvados_picard.py [new file with mode: 0644]
crunch_scripts/arvados_samtools.py [new file with mode: 0644]
crunch_scripts/bwa-aln [new file with mode: 0755]
crunch_scripts/bwa-index [new file with mode: 0755]
crunch_scripts/picard-gatk2-prep [new file with mode: 0755]