Peter Amstutz [Thu, 15 Sep 2022 22:39:31 +0000 (18:39 -0400)]
Add splitDir to take Directory input
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
swz [Thu, 15 Sep 2022 20:51:54 +0000 (20:51 +0000)]
Updating for proper loadListing
no issue #
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
swz [Thu, 15 Sep 2022 20:35:55 +0000 (20:35 +0000)]
Updating to take a directory
no issue #
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
swz [Thu, 15 Sep 2022 18:03:53 +0000 (18:03 +0000)]
Moving to directory
no issue #
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
swz [Thu, 15 Sep 2022 14:04:58 +0000 (14:04 +0000)]
Adding helper files and updating readme
no issue #
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
swz [Thu, 15 Sep 2022 12:44:44 +0000 (12:44 +0000)]
Adding RNA-Seq demo
no issue #
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
Ward Vandewege [Tue, 7 Dec 2021 15:18:20 +0000 (10:18 -0500)]
Merge branch 'blog-examples'
refs #18178
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Tue, 30 Nov 2021 16:56:31 +0000 (11:56 -0500)]
Add the star-index example for the debugging blog post.
refs #18178
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Wed, 24 Nov 2021 14:47:18 +0000 (09:47 -0500)]
18178: Final tweaks to the debugging blog post CWL.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Sarah Wait Zaranek [Mon, 12 Jul 2021 19:29:54 +0000 (19:29 +0000)]
Updating fastq
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Peter Amstutz [Tue, 26 Oct 2021 19:26:29 +0000 (15:26 -0400)]
Lower RAM request by bwa to run on 9tee4
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 25 Oct 2021 20:02:45 +0000 (20:02 +0000)]
Bugfix .bai secondary file for ApplyBSQR behavior
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Jiayong Li [Thu, 14 Jan 2021 22:48:51 +0000 (22:48 +0000)]
Merge branch '17049-make-singlechrom'
Arvados-DCO-1.1-Signed-off-by: Jiayong Li <jli@curii.com>
closes #17049
Jiayong Li [Thu, 14 Jan 2021 22:43:03 +0000 (22:43 +0000)]
Add comments on the chr19 only yml
Arvados-DCO-1.1-Signed-off-by: Jiayong Li <jli@curii.com>
refs #17049
Jiayong Li [Mon, 28 Dec 2020 22:07:21 +0000 (22:07 +0000)]
Add chr19 yml by changing fullintervallist
Arvados-DCO-1.1-Signed-off-by: Jiayong Li <jli@curii.com>
refs #17049
Jiayong Li [Tue, 15 Dec 2020 22:33:51 +0000 (22:33 +0000)]
Add workflow to generate single chromosome fastqs
Arvados-DCO-1.1-Signed-off-by: Jiayong Li <jli@curii.com>
refs #17049
Sarah Wait Zaranek [Thu, 13 Aug 2020 12:30:13 +0000 (12:30 +0000)]
updating yml
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Mon, 27 Jul 2020 20:08:24 +0000 (20:08 +0000)]
Updating yml for 2 vcfs of known sites
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Mon, 27 Jul 2020 20:05:28 +0000 (20:05 +0000)]
Fixing labels for knownsites
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Mon, 27 Jul 2020 19:56:49 +0000 (19:56 +0000)]
Updating to allow for two vcfs of known sites
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Thu, 23 Jul 2020 13:09:38 +0000 (13:09 +0000)]
Updating cwl and yml for intervals and other changes
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Tue, 14 Jul 2020 17:43:25 +0000 (17:43 +0000)]
Updating HTML edam comments
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Sun, 12 Jul 2020 19:17:03 +0000 (19:17 +0000)]
Updating comments
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Sun, 12 Jul 2020 19:12:27 +0000 (19:12 +0000)]
Fixing edam reference
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Fri, 10 Jul 2020 16:10:32 +0000 (16:10 +0000)]
Moving #
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Tue, 7 Jul 2020 15:48:30 +0000 (15:48 +0000)]
Updating docker reference
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Tue, 7 Jul 2020 15:46:14 +0000 (15:46 +0000)]
Updating bwa-samtools dockerfile
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Tue, 7 Jul 2020 00:41:03 +0000 (00:41 +0000)]
Adding more formats to yml
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Tue, 7 Jul 2020 00:36:13 +0000 (00:36 +0000)]
Updating yml for formats
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Fri, 3 Jul 2020 13:31:35 +0000 (13:31 +0000)]
Removing initial work dir requirement when not needed
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Fri, 3 Jul 2020 13:14:45 +0000 (13:14 +0000)]
Updating yml files
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Fri, 3 Jul 2020 13:10:27 +0000 (13:10 +0000)]
Updating yml files
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Thu, 2 Jul 2020 17:04:01 +0000 (17:04 +0000)]
Removing white spaces and commenting out schemas
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Thu, 2 Jul 2020 16:28:54 +0000 (16:28 +0000)]
Removing white space and commenting out schemas
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Thu, 2 Jul 2020 16:19:49 +0000 (16:19 +0000)]
Moving fastqc into not in use for docker containers
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Thu, 2 Jul 2020 16:19:04 +0000 (16:19 +0000)]
Removing white spaces and commenting schemas
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Thu, 2 Jul 2020 14:50:54 +0000 (14:50 +0000)]
Updating for new Docker containter
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Wed, 1 Jul 2020 19:04:34 +0000 (19:04 +0000)]
Adding links about CWL to the readme
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Wed, 1 Jul 2020 18:59:02 +0000 (18:59 +0000)]
Switching variable knownsites1 to knownsites in yml files
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Wed, 1 Jul 2020 18:56:55 +0000 (18:56 +0000)]
Switching variable knownsites1 to knownsites
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Wed, 1 Jul 2020 18:51:42 +0000 (18:51 +0000)]
Updating report generation code
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Wed, 1 Jul 2020 18:42:43 +0000 (18:42 +0000)]
Updating yml to include intervals
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Wed, 1 Jul 2020 18:42:15 +0000 (18:42 +0000)]
Adding metatdata and labels
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Wed, 1 Jul 2020 17:47:34 +0000 (17:47 +0000)]
Adding metadata, updating variables
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Wed, 1 Jul 2020 16:46:08 +0000 (16:46 +0000)]
Adding metadata
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Wed, 1 Jul 2020 16:00:28 +0000 (16:00 +0000)]
Adding metadata and step renaming
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Wed, 1 Jul 2020 14:35:47 +0000 (14:35 +0000)]
updating metadata
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Mon, 29 Jun 2020 21:42:02 +0000 (21:42 +0000)]
updating for metadata and yml to check command line cwl
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Fri, 26 Jun 2020 02:20:46 +0000 (02:20 +0000)]
Adding labels and metadata
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Fri, 26 Jun 2020 02:00:15 +0000 (02:00 +0000)]
Adding arv to namespace
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Fri, 26 Jun 2020 01:52:47 +0000 (01:52 +0000)]
Adding labels and other metadata
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Thu, 25 Jun 2020 14:43:29 +0000 (14:43 +0000)]
removing swp file
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Thu, 25 Jun 2020 14:42:13 +0000 (14:42 +0000)]
Adding labels and metadata
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Thu, 25 Jun 2020 13:49:58 +0000 (13:49 +0000)]
Updating labels and metadata
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Thu, 25 Jun 2020 13:13:01 +0000 (13:13 +0000)]
Even more formatting
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Thu, 25 Jun 2020 13:11:14 +0000 (13:11 +0000)]
Fixing formating issue
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Thu, 25 Jun 2020 13:10:08 +0000 (13:10 +0000)]
Adding Arvados info to readme
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Thu, 25 Jun 2020 13:06:46 +0000 (13:06 +0000)]
reorg of yml files
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Thu, 25 Jun 2020 13:03:51 +0000 (13:03 +0000)]
Updataing readme and yml files
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Thu, 25 Jun 2020 01:48:05 +0000 (01:48 +0000)]
Updating labels
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Thu, 25 Jun 2020 01:26:02 +0000 (01:26 +0000)]
Adding more labels
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Wed, 24 Jun 2020 23:36:02 +0000 (23:36 +0000)]
Adding more labels/metadata
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Wed, 24 Jun 2020 23:08:50 +0000 (23:08 +0000)]
Adding labels and other annotations
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Wed, 24 Jun 2020 19:46:10 +0000 (19:46 +0000)]
Updating labels and hints on cwl
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Wed, 24 Jun 2020 17:10:55 +0000 (17:10 +0000)]
Adding labels
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Wed, 24 Jun 2020 15:25:10 +0000 (15:25 +0000)]
Adding labels and formats to cwl
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Tue, 23 Jun 2020 19:42:58 +0000 (19:42 +0000)]
Updating main cwl workflow
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Tue, 23 Jun 2020 19:35:45 +0000 (19:35 +0000)]
Adding license info to cwl
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Tue, 23 Jun 2020 17:15:13 +0000 (17:15 +0000)]
Adding changes to Dockerfiles
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Tue, 23 Jun 2020 04:40:42 +0000 (04:40 +0000)]
Updating docker file for fastqc
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Tue, 23 Jun 2020 01:41:13 +0000 (01:41 +0000)]
Updating clinvar report docker file and reorganizing yml files
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Fri, 19 Jun 2020 21:07:50 +0000 (21:07 +0000)]
Updating readme
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Fri, 19 Jun 2020 21:02:48 +0000 (21:02 +0000)]
Updating licenseignore
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Fri, 19 Jun 2020 21:01:38 +0000 (21:01 +0000)]
Moving license location
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Fri, 19 Jun 2020 21:00:09 +0000 (21:00 +0000)]
Adding license and licenseignore
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Fri, 19 Jun 2020 20:54:20 +0000 (20:54 +0000)]
Updating readme
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Fri, 19 Jun 2020 20:49:38 +0000 (20:49 +0000)]
Moving readme to markdown
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Thu, 18 Jun 2020 14:17:21 +0000 (14:17 +0000)]
Updating not-in-use directory
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Thu, 18 Jun 2020 01:04:03 +0000 (01:04 +0000)]
Updating dockerfiles
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Thu, 18 Jun 2020 00:59:37 +0000 (00:59 +0000)]
removing un-needed yml
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Thu, 18 Jun 2020 00:56:12 +0000 (00:56 +0000)]
cleaning up src files
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Thu, 18 Jun 2020 00:52:51 +0000 (00:52 +0000)]
Updating readme and reorganization
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Wed, 17 Jun 2020 18:17:25 +0000 (18:17 +0000)]
Updating links to "helper" cwl
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Wed, 17 Jun 2020 17:13:54 +0000 (17:13 +0000)]
Add scatter wf for overall scatter
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Wed, 17 Jun 2020 16:47:27 +0000 (16:47 +0000)]
Adding readme and clean up
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Wed, 17 Jun 2020 16:20:39 +0000 (16:20 +0000)]
Rearranging for clarity
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Tue, 16 Jun 2020 01:42:38 +0000 (01:42 +0000)]
removing src code not in use
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Tue, 16 Jun 2020 01:41:05 +0000 (01:41 +0000)]
yml to get fastq from directory
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Tue, 16 Jun 2020 01:40:20 +0000 (01:40 +0000)]
Adding code to get fastqs from directory
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Mon, 15 Jun 2020 21:54:19 +0000 (21:54 +0000)]
updating yml
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Thu, 11 Jun 2020 19:58:06 +0000 (19:58 +0000)]
Adding modified code to select variants and gather arrays
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Thu, 28 May 2020 01:39:28 +0000 (01:39 +0000)]
Adding files for gathering gvcfs and cleaning gvcfs
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Fri, 22 May 2020 13:11:22 +0000 (13:11 +0000)]
Adding yml files for gathering and intervals
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Fri, 22 May 2020 13:06:10 +0000 (13:06 +0000)]
Adding gather cwls
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Fri, 8 May 2020 07:42:30 +0000 (07:42 +0000)]
adding helper directory for structure, may reorg later
adding cwl to do intervals and scattering
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Thu, 30 Apr 2020 00:41:03 +0000 (00:41 +0000)]
adding base recalibrator yml and updating bwamem yml
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Thu, 30 Apr 2020 00:40:18 +0000 (00:40 +0000)]
Updating bwamem CWL and adding base recalibrator cwl
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Wed, 29 Apr 2020 01:26:10 +0000 (01:26 +0000)]
removing unnecessary step, renaming cwl file
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Tue, 21 Apr 2020 01:32:04 +0000 (01:32 +0000)]
updating yml to include UK pgp example
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
Sarah Wait Zaranek [Tue, 21 Apr 2020 01:31:20 +0000 (01:31 +0000)]
updating cwl
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
projects / arvados-tutorial.git / log