Starting the lesson.
authorPeter Amstutz <peter.amstutz@curii.com>
Fri, 15 Jan 2021 20:31:23 +0000 (15:31 -0500)
committerPeter Amstutz <peter.amstutz@curii.com>
Tue, 26 Jan 2021 21:11:35 +0000 (16:11 -0500)
README.md [moved from README with 64% similarity]
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lesson1/rnaseq_analysis_on_input_file.sh [moved from scripts/rnaseq_analysis_on_input_file.sh with 100% similarity]

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+
+# Downloading reference data
+
+```
+mkdir rnaseq
+cd rnaseq
+wget --mirror --no-parent --no-host --cut-dirs=1 https://download.pirca.arvadosapi.com/c=pirca-4zz18-sa9s62lzc00jeds/
+```
+
+# Building the Docker image
+
+```
+cd dockerfile
+docker build -t cwl-training-rnaseq-tools .
+```
+
+# Acknowledgements
+
 These CWL lessons are based on "Introduction to RNA-seq using
 high-performance computing (HPC)" lessons developed by members of the
 teaching team at the Harvard Chan Bioinformatics Core (HBC) and
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+# Turning a bash script into a workflow
+
+In this lesson we will turn `rnaseq_analysis_on_input_file.sh` into a workflow.