From: Peter Amstutz <peter.amstutz@curii.com>
Date: Fri, 15 Jan 2021 20:31:23 +0000 (-0500)
Subject: Starting the lesson.
X-Git-Url: https://git.arvados.org/rnaseq-cwl-training.git/commitdiff_plain/1ead988de359a7ffb155615473fd03f5ab9c735d

Starting the lesson.
---

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+
+# Downloading reference data
+
+```
+mkdir rnaseq
+cd rnaseq
+wget --mirror --no-parent --no-host --cut-dirs=1 https://download.pirca.arvadosapi.com/c=pirca-4zz18-sa9s62lzc00jeds/
+```
+
+# Building the Docker image
+
+```
+cd dockerfile
+docker build -t cwl-training-rnaseq-tools .
+```
+
+# Acknowledgements
+
 These CWL lessons are based on "Introduction to RNA-seq using
 high-performance computing (HPC)" lessons developed by members of the
 teaching team at the Harvard Chan Bioinformatics Core (HBC) and
diff --git a/lesson1/lesson1.md b/lesson1/lesson1.md
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+# Turning a bash script into a workflow
+
+In this lesson we will turn `rnaseq_analysis_on_input_file.sh` into a workflow.
diff --git a/scripts/rnaseq_analysis_on_input_file.sh b/lesson1/rnaseq_analysis_on_input_file.sh
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