git.arvados.org - lightning.git/history

2021-02-08	Tom Clegg	Move command line tool to subdir.	blob \| commitdiff \| raw
2021-01-29	Tom Clegg	Log # low quality tile variants during import.	blob \| commitdiff \| raw \| diff to current
2020-12-02	Tom Clegg	Improve import and vcf2fasta performance.	blob \| commitdiff \| raw \| diff to current
2020-11-29	Tom Clegg	Increase concurrency, reduce allocs.	blob \| commitdiff \| raw \| diff to current
2020-11-29	Tom Clegg	Reduce lock contention.	blob \| commitdiff \| raw \| diff to current
2020-11-22	Tom Clegg	Accept filter args in pca-go.	blob \| commitdiff \| raw \| diff to current
2020-11-19	Tom Clegg	Configurable chromosome name pattern.	blob \| commitdiff \| raw \| diff to current
2020-11-13	Tom Clegg	Gzip gob files.	blob \| commitdiff \| raw \| diff to current
2020-11-12	Tom Clegg	When not saving incomplete tilevars, still save hashes...	blob \| commitdiff \| raw \| diff to current
2020-11-05	Tom Clegg	Renumber/prune variants for numpy export.	blob \| commitdiff \| raw \| diff to current
2020-11-01	Tom Clegg	Write annotations along with numpy.	blob \| commitdiff \| raw \| diff to current
2020-10-31	Tom Clegg	Use tilelib to load for export and pca.	blob \| commitdiff \| raw \| diff to current
2020-10-28	Tom Clegg	Log path len and # skipped out-of-order tiles per chrom...	blob \| commitdiff \| raw \| diff to current
2020-10-25	Tom Clegg	Write import stats to stats.json.	blob \| commitdiff \| raw \| diff to current
2020-10-23	Tom Clegg	Log input seq/chrom size, input coverage, tile coverage.	blob \| commitdiff \| raw \| diff to current
2020-10-22	Tom Clegg	Fix var reused in goroutine.	blob \| commitdiff \| raw \| diff to current
2020-10-21	Tom Clegg	Use only first field of fasta comment as sequence label.	blob \| commitdiff \| raw \| diff to current
2020-10-19	Tom Clegg	Handle variant 0 ("none") in CompactSequences.	blob \| commitdiff \| raw \| diff to current
2020-10-14	Tom Clegg	Export HGVS.	blob \| commitdiff \| raw \| diff to current
2020-10-12	Tom Clegg	Refactor merge.	blob \| commitdiff \| raw \| diff to current
2020-10-12	Tom Clegg	Add merge command.	blob \| commitdiff \| raw \| diff to current
2020-10-08	Tom Clegg	Include tile variant IDs in library.	blob \| commitdiff \| raw \| diff to current
2020-09-25	Tom Clegg	Option to treat tiles with no-calls as regular tiles.	blob \| commitdiff \| raw \| diff to current
2020-09-25	Tom Clegg	Option to output tile library when importing.	blob \| commitdiff \| raw \| diff to current
2020-09-02	Tom Clegg	Fix panic on blank line in fasta.	blob \| commitdiff \| raw \| diff to current
2020-09-02	Tom Clegg	Use real longest increasing subsequence algorithm for...	blob \| commitdiff \| raw \| diff to current
2020-04-24	Tom Clegg	Log # duplicate tags.	blob \| commitdiff \| raw \| diff to current
2020-04-24	Tom Clegg	Log number of skipped tags.	blob \| commitdiff \| raw \| diff to current
2020-04-24	Tom Clegg	-skip-ooo: fix skipping 7 in seq like 0-1-7-0	blob \| commitdiff \| raw \| diff to current
2020-04-23	Tom Clegg	Log out-of-order tags if -loglevel=debug.	blob \| commitdiff \| raw \| diff to current
2020-04-06	Tom Clegg	Option to skip/ignore out-of-order tags.	blob \| commitdiff \| raw \| diff to current
2020-03-05	Tom Clegg	Less verbose logging.	blob \| commitdiff \| raw \| diff to current
2020-01-31	Tom Clegg	Compact on the fly to reduce memory use.	blob \| commitdiff \| raw \| diff to current
2020-01-31	Tom Clegg	Skip chr_.	blob \| commitdiff \| raw \| diff to current
2020-01-31	Tom Clegg	Reduce allocs while tiling.	blob \| commitdiff \| raw \| diff to current
2020-01-20	Tom Clegg	Include ending tag in tile sequence.	blob \| commitdiff \| raw \| diff to current
2020-01-19	Tom Clegg	Use blake256 sum.	blob \| commitdiff \| raw \| diff to current
2020-01-17	Tom Clegg	Drop tiles with no-calls.	blob \| commitdiff \| raw \| diff to current
2020-01-17	Tom Clegg	Log tile library size periodically.	blob \| commitdiff \| raw \| diff to current
2020-01-15	Tom Clegg	md5 -> blake2b	blob \| commitdiff \| raw \| diff to current
2020-01-14	Tom Clegg	limit concurrency	blob \| commitdiff \| raw \| diff to current
2020-01-14	Tom Clegg	Output tile variant arrays.	blob \| commitdiff \| raw \| diff to current
2020-01-13	Tom Clegg	Initial tiling code.	blob \| commitdiff \| raw \| diff to current

RSS Atom