Log number of skipped tags.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

diff --git a/tilelib.go b/tilelib.go
index ce9d95fc9856d26f78d8eaf96517076c267af71f..be60ab2e1d6024341db4b4fb2397315c733d7a5a 100644 (file)
--- a/tilelib.go
+++ b/tilelib.go
@@ -80,6 +80,7 @@ func (tilelib *tileLibrary) TileFasta(filelabel string, rdr io.Reader) (tileSeq,
        }
        found := make([]foundtag, 2000000)
        path := make([]tileLibRef, 2000000)
+       totalFoundTags := 0
        totalPathLen := 0
        skippedSequences := 0
        for job := range todo {
@@ -95,6 +96,8 @@ func (tilelib *tileLibrary) TileFasta(filelabel string, rdr io.Reader) (tileSeq,
                tilelib.taglib.FindAll(job.fasta, func(tagid tagID, pos, taglen int) {
                        found = append(found, foundtag{pos: pos, tagid: tagid, taglen: taglen})
                })
+               totalFoundTags += len(found)
+
                path = path[:0]
                last := foundtag{tagid: -1}
                for i, f := range found {
@@ -124,10 +127,10 @@ func (tilelib *tileLibrary) TileFasta(filelabel string, rdr io.Reader) (tileSeq,
                pathcopy := make([]tileLibRef, len(path))
                copy(pathcopy, path)
                ret[job.label] = pathcopy
-               log.Debugf("%s %s tiled with path len %d", filelabel, job.label, len(path))
+               log.Debugf("%s %s tiled with path len %d, skipped %d", filelabel, job.label, len(path), len(found)-len(path))
                totalPathLen += len(path)
        }
-       log.Printf("%s tiled with total path len %d in %d sequences (skipped %d sequences with '_' in name)", filelabel, totalPathLen, len(ret), skippedSequences)
+       log.Printf("%s tiled with total path len %d in %d sequences (skipped %d sequences with '_' in name, skipped %d out-of-order tags)", filelabel, totalPathLen, len(ret), skippedSequences, totalFoundTags-totalPathLen)
        return ret, scanner.Err()
 }