| 2013-12-26 |
Peter Amstutz | * A couple of tweaks in response to Tom's feedback |
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| 2013-12-23 |
Peter Amstutz | * User is now taken to a "welcome" page where they... |
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| 2013-12-20 |
Tim Pierce | Remove extra `shift' screwing up argument processing. |
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| 2013-12-19 |
Tom Clegg | Update favicon to Dax |
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| 2013-12-19 |
Tom Clegg | Add Python SDK doc page. closes #1754 |
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| 2013-12-19 |
Tom Clegg | Accept an API version argument to arvados.api(). refs... |
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| 2013-12-19 |
Tim Pierce | Updated documentation for clarity. |
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| 2013-12-19 |
Tom Clegg | Fix up usage error message |
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| 2013-12-18 |
Peter Amstutz | Merge branch '1495-crunch-documentation' |
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| 2013-12-18 |
Peter Amstutz | * mailto:arvados@clinicalfuture.com is now arvados... |
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| 2013-12-17 |
Peter Amstutz | * Fixed template so subsections only show up in userguide |
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| 2013-12-17 |
Peter Amstutz | * Finished trait search tutorial |
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| 2013-12-17 |
Peter Amstutz | * Almost done with trait search tutorial |
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| 2013-12-17 |
Tom Clegg | Add new user activation + setup script. closes #1738 |
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| 2013-12-17 |
Tom Clegg | Return API response objects as Models (with save()... |
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| 2013-12-17 |
Tom Clegg | Propagate API errors as exceptions |
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| 2013-12-16 |
Peter Amstutz | Working on traits document |
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| 2013-12-16 |
Tom Clegg | Change arv-put default behavior: write a manifest,... |
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| 2013-12-16 |
Tom Clegg | Return empty-block locator in data_locators() for zero... |
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| 2013-12-16 |
Tom Clegg | Remove extra trailing newline in --raw mode output |
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| 2013-12-16 |
Tom Clegg | Fix some typos and long lines |
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| 2013-12-16 |
Peter Amstutz | * Fixed links |
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| 2013-12-16 |
Peter Amstutz | Reorganized user manual into sections |
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| 2013-12-16 |
Peter Amstutz | Reorganization, added parallel jobs and new pipeline... |
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| 2013-12-13 |
Tom Clegg | Add example ruby client: list idle/busy worker nodes... |
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| 2013-12-13 |
Tom Clegg | Obey ARVADOS_API_HOST_INSECURE if host came from ARVADO... |
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| 2013-12-13 |
Tom Clegg | Set jobs.log_tail_follow default buffer size in discove... |
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| 2013-12-13 |
Tom Clegg | Fix parsing of buffer_size parameter in jobs.log_tail_f... |
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| 2013-12-12 |
Tom Clegg | Stream API responses for jobs.log_tail_follow and users... |
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| 2013-12-12 |
Peter Amstutz | * Mostly done on "Debug a Crunch Script" |
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| 2013-12-12 |
Tom Clegg | Handle unexpected server responses better, clean up... |
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| 2013-12-12 |
Peter Amstutz | Merge remote-tracking branch 'origin' into 1495-crunch... |
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| 2013-12-12 |
Peter Amstutz | * split out sections into their own documents |
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| 2013-12-12 |
Tom Clegg | Remove TMP/src.commit too, when removing TMP/src. |
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| 2013-12-12 |
Tom Clegg | Fix left nav link order |
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| 2013-12-12 |
Tom Clegg | Store crunch-job log in a collection instead of just... |
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| 2013-12-12 |
Tom Clegg | Fix gatk_tbz locator. |
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| 2013-12-12 |
Tom Clegg | Revert "Rename annotation DepthOfCoverage to Coverage" |
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| 2013-12-12 |
Tom Clegg | Rename annotation DepthOfCoverage to Coverage |
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| 2013-12-12 |
Tom Clegg | Add input parameter tables and source code link for... |
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| 2013-12-12 |
Tom Clegg | Fix reference to picard source distribution -> binary... |
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| 2013-12-12 |
Tom Clegg | Remove unused module import. |
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| 2013-12-11 |
Tom Clegg | Use git@git.[...] not git://git.[...] as default reposi... |
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| 2013-12-11 |
Peter Amstutz | Formatting tweaks, mosting changing <pre> to textiles... |
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| 2013-12-11 |
Peter Amstutz | Merge branch '1637-improve-arv-tutorial' |
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| 2013-12-11 |
Tim Pierce | Fixed formatting. |
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| 2013-12-11 |
Tim Pierce | Added Keep tutorial (refs #1647) |
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| 2013-12-11 |
Tom Clegg | Add "crunch examples" and "crunch utility libraries... |
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| 2013-12-11 |
Tom Clegg | Clear $CRUNCH_TMP/src when starting a job. |
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| 2013-12-11 |
Tom Clegg | Add GATK2 exome fastq->vcf pipeline example |
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| 2013-12-11 |
Tom Clegg | When running "arv-get -n", it is OK if destination... |
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| 2013-12-10 |
Tom Clegg | Add docstrings to arvados_samtools module. |
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| 2013-12-10 |
Peter Amstutz | Removed numbering and put navorder for tutorial 2 at... |
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| 2013-12-10 |
Peter Amstutz | Missing file |
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| 2013-12-10 |
Peter Amstutz | Cleaned up comments to be hidden from rendered page... |
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| 2013-12-10 |
Peter Amstutz | Cleaned up old files and reorganized navigation order. |
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| 2013-12-10 |
Peter Amstutz | Finished first tutorial. |
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| 2013-12-10 |
Tom Clegg | Merge branch '1646-arv-put' |
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| 2013-12-10 |
Tom Clegg | Point "arv keep get/put" to arv-get/put and unsupport... |
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| 2013-12-10 |
Tom Clegg | Add "Install client libraries" page to doc/install/. |
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| 2013-12-10 |
Tom Clegg | Support invoking arv-get and arv-put via "arv get"... |
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| 2013-12-10 |
Tom Clegg | Add python client library package: arv-get, arv-put... |
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| 2013-12-10 |
Tim Pierce | Fix port flags for "run.sh start". |
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| 2013-12-10 |
Tom Clegg | Rename doc page to match title. |
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| 2013-12-10 |
Tom Clegg | Add "Create standard objects" page in install docs. |
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| 2013-12-10 |
Tom Clegg | Support the use of groups to grant repository permissions. |
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| 2013-12-10 |
Tom Clegg | Clean up arvados_bwa module and add docstrings. |
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| 2013-12-10 |
Tom Clegg | Merge branch 'master' into 1646-arv-put |
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| 2013-12-09 |
Tim Pierce | Merge branch '1587-fix-test-suites-in-devsandbox' |
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| 2013-12-09 |
Tom Clegg | Add arv-get -f (force overwrite) and --skip-existing... |
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| 2013-12-09 |
Tom Clegg | Support "arv-get {locator}/filename path/to/localdir... |
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| 2013-12-09 |
Tom Clegg | Fail gracefully when fetching a raw block that does... |
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| 2013-12-09 |
Tom Clegg | Fail more gracefully on some common error conditions |
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| 2013-12-09 |
Tom Clegg | Use our own exception classes, instead of just Exception |
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| 2013-12-09 |
Tom Clegg | Fix crash when destination directory supplied without... |
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| 2013-12-09 |
Tom Clegg | Use body={...} instead of object_type=json.dumps({... |
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| 2013-12-09 |
Tom Clegg | Add example scripts and libraries for bwa, samtools... |
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| 2013-12-09 |
Peter Amstutz | Merge remote-tracking branch 'origin/master' into 1637... |
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| 2013-12-08 |
Peter Amstutz | A little bit of documentation work from home |
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| 2013-12-06 |
Tim Pierce | Adding 'run.sh test api' to run API server Rails tests. |
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| 2013-12-06 |
Peter Amstutz | Documentation work in progress, making evening check-in. |
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| 2013-12-06 |
Tom Clegg | Ignore config/environments/test.rb and production.rb |
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| 2013-12-06 |
Tom Clegg | Ignore tmp directory created by cli tests |
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| 2013-12-06 |
Tim Pierce | Added 'test' command to run.sh. |
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| 2013-12-05 |
Tim Pierce | run.sh: bug fixes |
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| 2013-12-05 |
Peter Amstutz | Rewriting documentation work in progress. |
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| 2013-12-05 |
Tim Pierce | run.sh: add "stop" command, also remove old containers... |
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| 2013-12-05 |
Tom Clegg | Remove spurious "if". |
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| 2013-12-05 |
Tom Clegg | Use some helpful HTTP status codes, not just generic... |
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| 2013-12-05 |
Tom Clegg | Check permission before deleting objects |
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| 2013-12-05 |
Tim Pierce | Reorganized code to support 'start' command. |
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| 2013-12-05 |
Peter Amstutz | Merge branch 'master' of git.clinicalfuture.com:arvados... |
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| 2013-12-04 |
Tim Pierce | run.sh prints instructions/settings for running a test... |
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| 2013-12-04 |
peter | Notes on new user documentation |
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| 2013-12-04 |
Tim Pierce | Add support for ARVADOS_API_PORT. |
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| 2013-12-04 |
Tim Pierce | Superuser script must be run as ./script/create_superus... |
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| 2013-12-04 |
Tim Pierce | API_SUPERUSER_TOKEN must be named API_SUPERUSER_SECRET... |
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| 2013-12-04 |
Tim Pierce | run.sh bug fixes. |
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| 2013-12-04 |
Tim Pierce | Mount separate volumes for each keep container launched. |
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| 2013-12-04 |
Ward Vandewege | Allow overriding of default ports for API, doc, SSO... |
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