arvados.git
10 months ago20425: Merge branch 'main' into 20425-fed-pdh-retry 20425-fed-pdh-retry
Tom Clegg [Thu, 22 Jun 2023 16:55:05 +0000 (12:55 -0400)]
20425: Merge branch 'main' into 20425-fed-pdh-retry

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

10 months agoMerge branch '20374-workflow-main-prop' refs #20374
Peter Amstutz [Thu, 22 Jun 2023 14:43:12 +0000 (10:43 -0400)]
Merge branch '20374-workflow-main-prop' refs #20374

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

10 months agoMerge branch '20660-r-sdk-pr-204' refs #20660
Peter Amstutz [Thu, 22 Jun 2023 14:41:10 +0000 (10:41 -0400)]
Merge branch '20660-r-sdk-pr-204'  refs #20660

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

10 months ago20374: add arv:workflowMain to metadata properties doc. 20374-workflow-main-prop
Peter Amstutz [Thu, 22 Jun 2023 14:29:53 +0000 (10:29 -0400)]
20374: add arv:workflowMain to metadata properties doc.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

10 months ago20660: Tweaks to eliminate check warnings 20660-r-sdk-pr-204
Peter Amstutz [Thu, 22 Jun 2023 13:54:01 +0000 (09:54 -0400)]
20660: Tweaks to eliminate check warnings

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

10 months agoMerge branch '20664-java-sdk-pr-205' refs #20664
Peter Amstutz [Wed, 21 Jun 2023 20:42:51 +0000 (16:42 -0400)]
Merge branch '20664-java-sdk-pr-205' refs #20664

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

10 months ago20660: Add devtools::check to run_test.R
Peter Amstutz [Wed, 21 Jun 2023 20:34:26 +0000 (16:34 -0400)]
20660: Add devtools::check to run_test.R

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

10 months agoUpdate README.md
AnetaSta22 [Thu, 8 Jun 2023 12:20:35 +0000 (14:20 +0200)]
Update README.md

correct order

Add \dontrun{} in documentation in Arvados.R

Add \dontrun{} in documentation in ArvadosFile.R

Add \dontrun{} in documentation in Collection.R

Arvados-DCO-1.1-Signed-off-by: Aneta Stanczyk <aneta.stanczyk@contractors.roche.com>

10 months agoMerge branch '20643-login-sync-homedir-check'. Closes #20643
Lucas Di Pentima [Tue, 20 Jun 2023 14:45:40 +0000 (11:45 -0300)]
Merge branch '20643-login-sync-homedir-check'. Closes #20643

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

10 months ago20643: Skips user account processing earlier to avoid any partial configs. 20643-login-sync-homedir-check
Lucas Di Pentima [Tue, 20 Jun 2023 14:44:08 +0000 (11:44 -0300)]
20643: Skips user account processing earlier to avoid any partial configs.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

10 months agoAdd new list method parameters: include_old_versions, include_trash 20664-java-sdk-pr-205
Krzysztof Majewski [Tue, 20 Jun 2023 14:07:47 +0000 (16:07 +0200)]
Add new list method parameters: include_old_versions, include_trash

Arvados-DCO-1.1-Signed-off-by: Krzysztof Majewski majewski.kielce@gmail.com

10 months agoMerge branch '20602-queue-metrics'
Tom Clegg [Tue, 20 Jun 2023 14:03:20 +0000 (10:03 -0400)]
Merge branch '20602-queue-metrics'

refs #20602

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

10 months agoMerge branch '20647-cr-logs-preflight'
Tom Clegg [Tue, 20 Jun 2023 13:43:10 +0000 (09:43 -0400)]
Merge branch '20647-cr-logs-preflight'

fixes #20647

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

10 months ago20602: Allow lock requests to queue up to 2s (configurable). 20602-queue-metrics
Tom Clegg [Mon, 19 Jun 2023 20:41:18 +0000 (16:41 -0400)]
20602: Allow lock requests to queue up to 2s (configurable).

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

10 months agoMerge branch '20652-cwl-poll-select' refs #20652
Peter Amstutz [Mon, 19 Jun 2023 20:07:56 +0000 (16:07 -0400)]
Merge branch '20652-cwl-poll-select' refs #20652

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

10 months ago20647: Improve comment on header deduplication. 20647-cr-logs-preflight
Tom Clegg [Mon, 19 Jun 2023 19:29:58 +0000 (15:29 -0400)]
20647: Improve comment on header deduplication.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

10 months agoMerge branch '20637-prefetch-threads' refs #20637
Peter Amstutz [Mon, 19 Jun 2023 18:56:48 +0000 (14:56 -0400)]
Merge branch '20637-prefetch-threads' refs #20637

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

10 months ago20602: Report queue usage bucketed by priority.
Tom Clegg [Mon, 19 Jun 2023 18:37:50 +0000 (14:37 -0400)]
20602: Report queue usage bucketed by priority.

Also report queue time stats for requests that are abandoned before
getting a processing slot.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

10 months ago20602: Report queue time for pos/neg/zero-priority reqs.
Tom Clegg [Mon, 19 Jun 2023 15:53:38 +0000 (11:53 -0400)]
20602: Report queue time for pos/neg/zero-priority reqs.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

10 months ago20647: Fix duplicate response headers via reverse proxy.
Tom Clegg [Sat, 17 Jun 2023 02:19:41 +0000 (22:19 -0400)]
20647: Fix duplicate response headers via reverse proxy.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

10 months ago20637: Fix tests 20637-prefetch-threads
Peter Amstutz [Fri, 16 Jun 2023 19:46:48 +0000 (15:46 -0400)]
20637: Fix tests

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

10 months ago20637: Fix arv-get
Peter Amstutz [Fri, 16 Jun 2023 18:53:49 +0000 (14:53 -0400)]
20637: Fix arv-get

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

10 months ago20637: Move the prefetch thread pool to KeepClient
Peter Amstutz [Fri, 16 Jun 2023 18:35:20 +0000 (14:35 -0400)]
20637: Move the prefetch thread pool to KeepClient

This avoids the problem of every Collection with its own BlockManager
creating its own prefetch thread pool, which becomes a resource leak
when reading files from 1000s of separate Collection objects.

The 'put' thread pool remains with the BlockManager but it now stops
the put threads on 'BlockManager.commit_all'.  This is because this
method always flushes pending blocks anyway, and is called before the
collection record is written to the API server -- so we can assume
we've just finished a batch of writes to that collection, and might
not need the put thread pool any more, and if we do, we can just make
a new one.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

10 months ago20602: Add queue metrics.
Tom Clegg [Fri, 16 Jun 2023 17:58:16 +0000 (13:58 -0400)]
20602: Add queue metrics.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

10 months ago20652: When polling the API server, limit fields returned 20652-cwl-poll-select
Peter Amstutz [Fri, 16 Jun 2023 15:48:24 +0000 (11:48 -0400)]
20652: When polling the API server, limit fields returned

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

10 months agoMerge branch '20647-cr-logs-preflight'
Tom Clegg [Fri, 16 Jun 2023 15:10:06 +0000 (11:10 -0400)]
Merge branch '20647-cr-logs-preflight'

fixes #20647

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

10 months agoMerge branch '20601-supervisor-fraction' refs #20601
Peter Amstutz [Fri, 16 Jun 2023 14:26:12 +0000 (10:26 -0400)]
Merge branch '20601-supervisor-fraction' refs #20601

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

10 months ago20601: Rename Scheduler.maxSupervisors -> Scheduler.supervisorFraction 20601-supervisor-fraction
Peter Amstutz [Fri, 16 Jun 2023 14:00:25 +0000 (10:00 -0400)]
20601: Rename Scheduler.maxSupervisors -> Scheduler.supervisorFraction

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

10 months ago20647: Test CORS preflight request routing.
Tom Clegg [Fri, 16 Jun 2023 06:06:35 +0000 (02:06 -0400)]
20647: Test CORS preflight request routing.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

10 months ago20647: Fix CORS preflight request handling.
Tom Clegg [Fri, 16 Jun 2023 06:05:59 +0000 (02:05 -0400)]
20647: Fix CORS preflight request handling.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

10 months ago20601: MaxSupervisorFraction is relative to maxConcurrency.
Tom Clegg [Thu, 15 Jun 2023 19:53:34 +0000 (15:53 -0400)]
20601: MaxSupervisorFraction is relative to maxConcurrency.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

10 months agoMerge branch '20601-big-ctr-queue'
Tom Clegg [Thu, 15 Jun 2023 18:59:49 +0000 (14:59 -0400)]
Merge branch '20601-big-ctr-queue'

refs #20601

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

10 months ago20643: Improves error message.
Lucas Di Pentima [Thu, 15 Jun 2023 13:05:01 +0000 (10:05 -0300)]
20643: Improves error message.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

10 months ago20643: Skip (with a log error) users that don't have their HOME dirs created.
Lucas Di Pentima [Wed, 14 Jun 2023 15:07:44 +0000 (12:07 -0300)]
20643: Skip (with a log error) users that don't have their HOME dirs created.

Some systems may be able to resolve users from centralized services, but
need additional steps to allow them to log into the shell node. We then
expect that allowed users should already have their HOME directories created
before doing any syncing.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

10 months agoMerge branch '20602-controller-qos'
Tom Clegg [Tue, 13 Jun 2023 16:13:25 +0000 (12:13 -0400)]
Merge branch '20602-controller-qos'

refs #20602

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

10 months ago20601: Add comment re fetch-by-uuid loop. 20601-big-ctr-queue
Tom Clegg [Tue, 13 Jun 2023 13:58:51 +0000 (09:58 -0400)]
20601: Add comment re fetch-by-uuid loop.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

10 months ago20601: Slow down container queue polling when busy/slow.
Tom Clegg [Mon, 12 Jun 2023 19:47:57 +0000 (15:47 -0400)]
20601: Slow down container queue polling when busy/slow.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

10 months ago20602: Add IneligibleForQueuePriority const. 20602-controller-qos
Tom Clegg [Mon, 12 Jun 2023 18:47:30 +0000 (14:47 -0400)]
20602: Add IneligibleForQueuePriority const.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

10 months ago20602: Use stdlib heap implementation.
Tom Clegg [Mon, 12 Jun 2023 18:43:39 +0000 (14:43 -0400)]
20602: Use stdlib heap implementation.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

10 months ago20601: Fetch mounts field only once per container.
Tom Clegg [Mon, 12 Jun 2023 18:18:13 +0000 (14:18 -0400)]
20601: Fetch mounts field only once per container.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

10 months ago20601: Fetch only high-priority containers when queue is long.
Tom Clegg [Mon, 12 Jun 2023 15:29:33 +0000 (11:29 -0400)]
20601: Fetch only high-priority containers when queue is long.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

10 months ago20425: Reduce timeout for keep-web->controller calls from 5m to 1m.
Tom Clegg [Fri, 9 Jun 2023 14:07:23 +0000 (10:07 -0400)]
20425: Reduce timeout for keep-web->controller calls from 5m to 1m.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

10 months ago20425: Fix response status for mixed-status backend errors.
Tom Clegg [Fri, 9 Jun 2023 13:31:37 +0000 (09:31 -0400)]
20425: Fix response status for mixed-status backend errors.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

10 months ago20425: Test response status for mixed-status backend errors.
Tom Clegg [Mon, 5 Jun 2023 19:15:17 +0000 (15:15 -0400)]
20425: Test response status for mixed-status backend errors.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

10 months ago20425: Revert "12684/20425: Skip TestContainerInputOnDifferentCluster"
Tom Clegg [Mon, 5 Jun 2023 14:50:07 +0000 (10:50 -0400)]
20425: Revert "12684/20425: Skip TestContainerInputOnDifferentCluster"

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

10 months agoMerge branch '20614-no-retry-cancel' refs #20614
Peter Amstutz [Thu, 8 Jun 2023 20:12:22 +0000 (16:12 -0400)]
Merge branch '20614-no-retry-cancel'  refs #20614

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

10 months ago20602: Disable queue when testing DumpRequests.
Tom Clegg [Thu, 8 Jun 2023 18:30:23 +0000 (14:30 -0400)]
20602: Disable queue when testing DumpRequests.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

10 months ago20602: Prioritize backend traffic from keep-web as interactive.
Tom Clegg [Thu, 8 Jun 2023 14:31:11 +0000 (10:31 -0400)]
20602: Prioritize backend traffic from keep-web as interactive.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

10 months ago20602: Attach assigned priority to response log entry.
Tom Clegg [Thu, 8 Jun 2023 14:30:35 +0000 (10:30 -0400)]
20602: Attach assigned priority to response log entry.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

10 months ago20602: Prioritize interactive (browser) requests.
Tom Clegg [Wed, 7 Jun 2023 21:13:30 +0000 (17:13 -0400)]
20602: Prioritize interactive (browser) requests.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

10 months ago20602: Priority MinInt64 means never wait in queue.
Tom Clegg [Wed, 7 Jun 2023 21:12:17 +0000 (17:12 -0400)]
20602: Priority MinInt64 means never wait in queue.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

10 months ago20602: Add MaxQueuedRequests config.
Tom Clegg [Wed, 7 Jun 2023 16:37:40 +0000 (12:37 -0400)]
20602: Add MaxQueuedRequests config.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

10 months ago20602: Add priority queue to RequestLimiter.
Tom Clegg [Wed, 7 Jun 2023 16:37:25 +0000 (12:37 -0400)]
20602: Add priority queue to RequestLimiter.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

10 months ago20614: Better query for live container requests when deciding to retry 20614-no-retry-cancel
Peter Amstutz [Thu, 8 Jun 2023 16:31:48 +0000 (12:31 -0400)]
20614: Better query for live container requests when deciding to retry

Now takes into account the state and priority of the requesting
container, if any.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

10 months agoMerge branch '20613-googleapiclient-init-logs'
Brett Smith [Wed, 7 Jun 2023 20:28:53 +0000 (16:28 -0400)]
Merge branch '20613-googleapiclient-init-logs'

Closes #20613.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

10 months ago20613: Update unconfigured logger check to accommodate NullHandler 20613-googleapiclient-init-logs
Brett Smith [Wed, 7 Jun 2023 19:00:43 +0000 (15:00 -0400)]
20613: Update unconfigured logger check to accommodate NullHandler

googleapiclient sets up its own NullHandler, as recommended by the
logging documentation. That makes the hasHandlers() test not work as
intended, so instead we traverse the hierarchy ourselves looking for a
real handler.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

10 months agoMerge branch '20548-installer-deploy' refs #20548
Peter Amstutz [Wed, 7 Jun 2023 17:51:21 +0000 (13:51 -0400)]
Merge branch '20548-installer-deploy' refs #20548

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

10 months agoInitialize rcode variable, refs #20611
Peter Amstutz [Mon, 5 Jun 2023 22:10:07 +0000 (18:10 -0400)]
Initialize rcode variable, refs #20611

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

10 months ago20613: Add an upgrade note about new PySDK logging
Brett Smith [Wed, 7 Jun 2023 16:39:44 +0000 (12:39 -0400)]
20613: Add an upgrade note about new PySDK logging

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

10 months ago20613: Fix test syntax for older Pythons
Brett Smith [Wed, 7 Jun 2023 14:50:58 +0000 (10:50 -0400)]
20613: Fix test syntax for older Pythons

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

10 months ago20613: Deconfigure logger after an exception
Brett Smith [Wed, 7 Jun 2023 14:24:04 +0000 (10:24 -0400)]
20613: Deconfigure logger after an exception

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

10 months ago20613: Bugfix boolean tucnaround
Brett Smith [Wed, 7 Jun 2023 12:04:13 +0000 (08:04 -0400)]
20613: Bugfix boolean tucnaround

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

10 months ago20613: Use GoogleHTTPClientFilter in a-c-r
Brett Smith [Tue, 6 Jun 2023 19:35:01 +0000 (15:35 -0400)]
20613: Use GoogleHTTPClientFilter in a-c-r

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

10 months ago20613: Log early discovery document retries
Brett Smith [Tue, 6 Jun 2023 19:33:03 +0000 (15:33 -0400)]
20613: Log early discovery document retries

See comments for rationale.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

10 months ago20613: Introduce arvados.logging.GoogleHTTPClientFilter
Brett Smith [Tue, 6 Jun 2023 18:55:21 +0000 (14:55 -0400)]
20613: Introduce arvados.logging.GoogleHTTPClientFilter

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

10 months ago20613: Start PySDK logging module with existing constants
Brett Smith [Tue, 6 Jun 2023 18:54:22 +0000 (14:54 -0400)]
20613: Start PySDK logging module with existing constants

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

10 months agoMerge branch '20522-load-dispatch-priv-key'
Tom Clegg [Mon, 5 Jun 2023 19:16:11 +0000 (15:16 -0400)]
Merge branch '20522-load-dispatch-priv-key'

closes #20522

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

10 months agoMerge branch '20594-scaling-nginx-settings'. Closes #20594
Lucas Di Pentima [Mon, 5 Jun 2023 18:47:32 +0000 (15:47 -0300)]
Merge branch '20594-scaling-nginx-settings'. Closes #20594

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

11 months ago20548: Emit the git commit in the deploy log. 20548-installer-deploy
Peter Amstutz [Fri, 2 Jun 2023 20:37:53 +0000 (16:37 -0400)]
20548: Emit the git commit in the deploy log.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

11 months ago20548: Rework git deployment a bit
Peter Amstutz [Fri, 2 Jun 2023 20:18:07 +0000 (16:18 -0400)]
20548: Rework git deployment a bit

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

11 months agoMerge branch '20531-cwl-log-tail' refs #20531
Peter Amstutz [Fri, 2 Jun 2023 17:59:52 +0000 (13:59 -0400)]
Merge branch '20531-cwl-log-tail' refs #20531

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

11 months ago20531: Add --reinstall option to test_with_arvbox.sh 20531-cwl-log-tail
Peter Amstutz [Fri, 2 Jun 2023 17:39:04 +0000 (13:39 -0400)]
20531: Add --reinstall option to test_with_arvbox.sh

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

11 months agoMerge branch '20541-less-fetching-mounts'
Tom Clegg [Fri, 2 Jun 2023 16:11:02 +0000 (12:11 -0400)]
Merge branch '20541-less-fetching-mounts'

fixes #20541

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

11 months ago20531: Bump cwltool and schema-salad versions
Peter Amstutz [Fri, 2 Jun 2023 15:21:35 +0000 (11:21 -0400)]
20531: Bump cwltool and schema-salad versions

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

11 months ago20531: Suppress googleapiclient retry warning, better download error
Peter Amstutz [Fri, 2 Jun 2023 15:19:25 +0000 (11:19 -0400)]
20531: Suppress googleapiclient retry warning, better download error

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

11 months agoIncrease WatchdogInterval and WatchdogThreshold
Peter Amstutz [Fri, 26 May 2023 19:26:12 +0000 (15:26 -0400)]
Increase WatchdogInterval and WatchdogThreshold

Quick workaround for customer, we should add these to the config file.

refs #20595

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

11 months agoMerge branch '20540-crunch-run-retry'
Tom Clegg [Thu, 1 Jun 2023 19:13:57 +0000 (15:13 -0400)]
Merge branch '20540-crunch-run-retry'

fixes #20540

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

11 months ago20531: Remove urllib3 pin, add cwltest pin.
Peter Amstutz [Thu, 1 Jun 2023 18:32:47 +0000 (14:32 -0400)]
20531: Remove urllib3 pin, add cwltest pin.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

11 months ago20540: Increase crunch-run API call timeouts to 10m. 20540-crunch-run-retry
Tom Clegg [Thu, 1 Jun 2023 17:54:41 +0000 (13:54 -0400)]
20540: Increase crunch-run API call timeouts to 10m.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

11 months agoMerge branch '20545-drop-if-none-match'
Brett Smith [Thu, 1 Jun 2023 15:53:27 +0000 (11:53 -0400)]
Merge branch '20545-drop-if-none-match'

Closes #20545.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

11 months agoMerge branch '20433-crunch-log-zero-bytes-job'
Brett Smith [Thu, 1 Jun 2023 15:53:23 +0000 (11:53 -0400)]
Merge branch '20433-crunch-log-zero-bytes-job'

Closes #20433.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

11 months agoMerge branch '20561-file-copy-logging' refs #20561
Peter Amstutz [Thu, 1 Jun 2023 14:23:41 +0000 (10:23 -0400)]
Merge branch '20561-file-copy-logging' refs #20561

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

11 months ago20545: Drop If-None-Match from requests proxied by controller 20545-drop-if-none-match
Brett Smith [Thu, 1 Jun 2023 13:51:29 +0000 (09:51 -0400)]
20545: Drop If-None-Match from requests proxied by controller

See comments for rationale.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

11 months agoMerge branch '20485-optional-deploy-ssh-key'
Tom Clegg [Thu, 1 Jun 2023 13:33:48 +0000 (09:33 -0400)]
Merge branch '20485-optional-deploy-ssh-key'

closes #20485

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

11 months ago20433: Document that LimitLogBytesPerJob=0 disables live logging 20433-crunch-log-zero-bytes-job
Brett Smith [Wed, 31 May 2023 20:46:36 +0000 (16:46 -0400)]
20433: Document that LimitLogBytesPerJob=0 disables live logging

Except for the throttle message, which is a nice user affordance.

Add a test for this specific case.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

11 months ago20485: Test handling of nil publickey argument. 20485-optional-deploy-ssh-key
Tom Clegg [Wed, 31 May 2023 19:55:33 +0000 (15:55 -0400)]
20485: Test handling of nil publickey argument.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

11 months ago20540: Ensure delay>0 at attempt>0, even if requested min=0.
Tom Clegg [Wed, 31 May 2023 19:24:30 +0000 (15:24 -0400)]
20540: Ensure delay>0 at attempt>0, even if requested min=0.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

11 months ago20541: Auto unselect fields if response body will not be read. 20541-less-fetching-mounts
Tom Clegg [Wed, 31 May 2023 13:59:30 +0000 (09:59 -0400)]
20541: Auto unselect fields if response body will not be read.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

11 months ago20540: Implement nearly-full jitter for exponential backoff.
Tom Clegg [Tue, 30 May 2023 20:54:03 +0000 (16:54 -0400)]
20540: Implement nearly-full jitter for exponential backoff.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

11 months ago20561: Don't fail when inspecting a file outside the output directory 20561-file-copy-logging
Peter Amstutz [Tue, 30 May 2023 18:58:13 +0000 (14:58 -0400)]
20561: Don't fail when inspecting a file outside the output directory

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

11 months ago20541: Unselect unneeded fields in API calls from crunch-run.
Tom Clegg [Tue, 30 May 2023 14:33:56 +0000 (10:33 -0400)]
20541: Unselect unneeded fields in API calls from crunch-run.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

11 months agoMerge branch '20229-doc-inspect-requests'
Tom Clegg [Mon, 29 May 2023 19:43:17 +0000 (15:43 -0400)]
Merge branch '20229-doc-inspect-requests'

closes #20229

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

11 months ago20229: Improve formatting.
Tom Clegg [Mon, 29 May 2023 19:42:51 +0000 (15:42 -0400)]
20229: Improve formatting.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

11 months ago20485: Option to skip automatic SSH key deployment on cloud VMs.
Tom Clegg [Mon, 29 May 2023 19:24:52 +0000 (15:24 -0400)]
20485: Option to skip automatic SSH key deployment on cloud VMs.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

11 months ago20540: Use arvados.Client for arvadosclient.ArvadosClient reqs.
Tom Clegg [Mon, 29 May 2023 19:11:27 +0000 (15:11 -0400)]
20540: Use arvados.Client for arvadosclient.ArvadosClient reqs.

Caller-specified Retries is used as a timeout in minutes.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

11 months agoMerge branch '20520-instance-init-command'
Tom Clegg [Fri, 26 May 2023 19:30:25 +0000 (15:30 -0400)]
Merge branch '20520-instance-init-command'

refs #20520

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

11 months ago20540: Remove arvadosclient usage in copier and git_tree.
Tom Clegg [Fri, 26 May 2023 19:22:01 +0000 (15:22 -0400)]
20540: Remove arvadosclient usage in copier and git_tree.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

11 months ago20595: Scales nginx settings depending on max concurrent requests config. 20594-scaling-nginx-settings
Lucas Di Pentima [Fri, 26 May 2023 18:45:31 +0000 (15:45 -0300)]
20595: Scales nginx settings depending on max concurrent requests config.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

11 months ago20520: Fix broken link. 20520-instance-init-command
Tom Clegg [Fri, 26 May 2023 14:25:36 +0000 (10:25 -0400)]
20520: Fix broken link.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

11 months ago20520: Fix unreleased mutex on error importing SSH key.
Tom Clegg [Fri, 26 May 2023 14:10:09 +0000 (10:10 -0400)]
20520: Fix unreleased mutex on error importing SSH key.

Any error listing or importing keys (which, luckily, only happens the
first time a arvados-dispatch-cloud process creates a new instance)
would cause Create() call to fail, and cause all subsequent Create()
calls to hang forever until the service is restarted.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>