20660: Tweaks to eliminate check warnings

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

diff --git a/sdk/R/R/ArvadosR.R b/sdk/R/R/ArvadosR.R
index d2747bdf1b15d047b5cb5b9430e0f8b61589d4fd..00b068c28a47820f4a7005203921a54390a06d8f 100644 (file)
--- a/sdk/R/R/ArvadosR.R
+++ b/sdk/R/R/ArvadosR.R
@@ -17,8 +17,9 @@
 #' \item Piotr Nowosielski}\r
 #'\r
 #' @seealso \itemize{\r
-#' \item \code{\link{https://github.com/arvados/arvados/blob/main/README.md}}\r
-#' \item \code{\link{https://github.com/arvados/arvados/tree/main/sdk/R}}}\r
+#' \item https://arvados.org\r
+#' \item https://doc.arvados.org/sdk/R/index.html\r
+#' \item https://git.arvados.org/arvados.git/tree/HEAD:/sdk/R}\r
 #'\r
 #' @name ArvadosR\r
 NULL\r

diff --git a/sdk/R/R/Collection.R b/sdk/R/R/Collection.R
index 43a4b0b6084f133cee02269f5a45649a8d5e0ce3..9ca74accc56eb27b33c7739980adcaa22ca7da56 100644 (file)
--- a/sdk/R/R/Collection.R
+++ b/sdk/R/R/Collection.R
@@ -9,7 +9,7 @@
 #' for exaplme actions like creating, updating, moving or removing are possible.
 #'
 #' @seealso
-#' \code{\link{https://github.com/arvados/arvados/tree/main/sdk/R}}
+#' https://git.arvados.org/arvados.git/tree/HEAD:/sdk/R
 #'
 #' @export
 
@@ -454,10 +454,3 @@ print.Collection = function(x, ...)
     cat(paste0("Type: ", "\"", "Arvados Collection", "\""), sep = "\n")
     cat(paste0("uuid: ", "\"", x$uuid,               "\""), sep = "\n")
 }
-
-
-
-
-
-
-

diff --git a/sdk/R/R/autoGenAPI.R b/sdk/R/R/autoGenAPI.R
index c86684f8b0a13ab62f53eddc23884a16e2504ffc..fbf58c2f51744173335709d35b517037a92d62ef 100644 (file)
--- a/sdk/R/R/autoGenAPI.R
+++ b/sdk/R/R/autoGenAPI.R
@@ -9,6 +9,10 @@ getAPIDocument <- function(){
     httr::content(serverResponse, as = "parsed", type = "application/json")
 }
 
+#' generateAPI
+#'
+#' Autogenerate classes to interact with Arvados from the Arvados discovery document.
+#'
 #' @export
 generateAPI <- function()
 {

diff --git a/sdk/R/man/ArvadosR.Rd b/sdk/R/man/ArvadosR.Rd
index fe6297a2796df513cff028c5eae152956fe06a9f..51edb8b138a451bf6ad07b13912ca0fc4b7fb245 100644 (file)
--- a/sdk/R/man/ArvadosR.Rd
+++ b/sdk/R/man/ArvadosR.Rd
@@ -8,8 +8,9 @@ Arvados is an open source platform for managing, processing, and sharing genomic
 }
 \seealso{
 \itemize{
-\item \code{\link{https://github.com/arvados/arvados/blob/main/README.md}}
-\item \code{\link{https://github.com/arvados/arvados/tree/main/sdk/R}}}
+\item https://arvados.org
+\item https://doc.arvados.org/sdk/R/index.html
+\item https://git.arvados.org/arvados.git/tree/HEAD:/sdk/R}
 }
 \author{
 \itemize{

diff --git a/sdk/R/man/Collection.Rd b/sdk/R/man/Collection.Rd
index 8ac6fcce14ac4320e6d45b6b7e7faef39db9d687..0de9a842e6805656c15a3924b58030f3e2412dcc 100644 (file)
--- a/sdk/R/man/Collection.Rd
+++ b/sdk/R/man/Collection.Rd
@@ -103,7 +103,7 @@ arvadosFile <- collection$get(fileName)
 }\r
 }\r
 \seealso{\r
-\code{\link{https://github.com/arvados/arvados/tree/main/sdk/R}}\r
+https://git.arvados.org/arvados.git/tree/HEAD:/sdk/R\r
 }\r
 \section{Public fields}{\r
 \if{html}{\out{<div class="r6-fields">}}\r