Brett Smith [Wed, 20 Aug 2014 18:18:24 +0000 (14:18 -0400)]
Merge branch '2800-pysdk-no-global-keep-client-wip'
Closes #2800, #3639.
Brett Smith [Wed, 20 Aug 2014 13:24:22 +0000 (09:24 -0400)]
2800: Use local KeepClients in Python SDK tests.
This improves test isolation, and demonstrates the preferred way to
use the API.
Brett Smith [Wed, 20 Aug 2014 13:46:49 +0000 (09:46 -0400)]
2800: Introduce TestCaseWithServers to Python SDK.
This is a subclass of unittest.TestCase. It looks for specific class
variables to launch supporting Arvados servers for subclass test
cases, taking care to adjust the environment and local Arvados
configuration to match. Put another away, this refactors a number of
similar setUpClass/tearDownClass methods throughout the SDK tests.
Brett Smith [Tue, 19 Aug 2014 20:41:33 +0000 (16:41 -0400)]
2800: Make run_test_server put Keep tempfiles in tests/tmp/.
Brett Smith [Tue, 19 Aug 2014 20:37:42 +0000 (16:37 -0400)]
2800: Use dedicated logger in Python SDK api module.
Brett Smith [Wed, 20 Aug 2014 13:46:33 +0000 (09:46 -0400)]
2800: Migrate from Keep to KeepClient in the Python SDK.
Brett Smith [Tue, 19 Aug 2014 14:17:57 +0000 (10:17 -0400)]
2800: Remove global state from KeepClient.
This commit makes it possible to build and use a KeepClient that isn't
influenced by changes in outside state. Changing the KeepClient based
on global state has been pushed up to the simple Keep class.
This commit changes the tests as little as possible to demonstrate
backward compatibility. Refactoring the tests to build KeepClients
directly will come in the future.
Brett Smith [Tue, 19 Aug 2014 14:01:36 +0000 (10:01 -0400)]
2800: Improve spec conformance of Python SDK KeepLocator.
* Require size to immediately follow digest.
* Accept all valid hints.
Brett Smith [Tue, 19 Aug 2014 13:59:53 +0000 (09:59 -0400)]
2800: Introduce config.flag_is_true() to Python SDK.
radhika [Wed, 20 Aug 2014 15:43:34 +0000 (11:43 -0400)]
Merge branch 'master' into 3153-auto-setup-user
radhika [Wed, 20 Aug 2014 15:40:49 +0000 (11:40 -0400)]
Merge branch 'master' into 3112-report-bug
radhika [Wed, 20 Aug 2014 15:39:58 +0000 (11:39 -0400)]
3112: update config param names for report notification
Brett Smith [Wed, 20 Aug 2014 15:18:54 +0000 (11:18 -0400)]
Merge branch '3499-home-project-docs-wip'
Closes #3516. Refs #3499.
Brett Smith [Fri, 15 Aug 2014 20:08:52 +0000 (16:08 -0400)]
3499: Update Keep tutorial for recent UI changes.
Brett Smith [Fri, 15 Aug 2014 19:38:04 +0000 (15:38 -0400)]
3499: Update pipeline tutorial for recent UI changes.
Brett Smith [Fri, 15 Aug 2014 15:44:46 +0000 (11:44 -0400)]
3499: Improve style consistency throughout docs.
* Capitalize Dashboard.
* Article use: "access Workbench," "access the Dashboard."
* Bold references to Workbench UI elements.
* Make example Arvados environment variables more realistic.
radhika [Wed, 20 Aug 2014 14:51:09 +0000 (10:51 -0400)]
Merge branch 'master' into 3112-report-bug
radhika [Wed, 20 Aug 2014 14:31:50 +0000 (10:31 -0400)]
Merge branch 'master' into 3112-report-bug. Also, break search testing into a separate project.
Conflicts:
apps/workbench/app/controllers/application_controller.rb
apps/workbench/config/application.default.yml
apps/workbench/test/integration/application_layout_test.rb
Tom Clegg [Wed, 20 Aug 2014 14:10:33 +0000 (10:10 -0400)]
Merge branch '3610-pipeline-log-refresh' closes #3610
Phil Hodgson [Wed, 20 Aug 2014 13:04:54 +0000 (09:04 -0400)]
Merge branch 'master' into 3354-render-textile
Conflicts (resolved):
apps/workbench/app/controllers/application_controller.rb
Peter Amstutz [Wed, 20 Aug 2014 02:10:10 +0000 (22:10 -0400)]
3036: Fix arv-put to write name/owner of collections object directly when
'name' field is present on the returned object. Python SDK tests pass.
Peter Amstutz [Wed, 20 Aug 2014 02:09:02 +0000 (22:09 -0400)]
3036: Fix #updating collection objects. Fixed database seed for empty_collection.
Tom Clegg [Wed, 20 Aug 2014 00:57:46 +0000 (20:57 -0400)]
3610: Move live log display into its own tab, avoid clobbering with tab reload.
* PipelineInstances#show gets a Log tab dedicated to the live log
window, rather than hiding it below the components table.
* Jobs#show uses its Log tab to show a live log window (instead of a
teaser) when the log is not yet finished/written to disk.
* In both cases, the live log window's tab pane intercepts and ignores
the arv:tab:reload event. (Previously, in addition to appending log
entries to the live window, websocket events would trigger a
"refresh all tabs" event, which would blow away the whole log viewer
anyway.)
* Behave sensibly when multiple lines of stderr arrive in a single
websocket update event.
* Stop displaying "update {pipeline-uuid}" messages that have no
additional content.
* Stop scrolling to bottom every time an ajax:complete fires
somewhere. (Previously, seeing anything above the last page of logs
was somewhere between annoying and impossible.)
* Make the log window taller.
radhika [Tue, 19 Aug 2014 21:30:26 +0000 (17:30 -0400)]
Merge branch 'master' into 3153-auto-setup-user
radhika [Tue, 19 Aug 2014 21:29:46 +0000 (17:29 -0400)]
3153: auto-setup user during creation.
Peter Amstutz [Tue, 19 Aug 2014 17:19:52 +0000 (13:19 -0400)]
3036: Fix merge mistakes in collection_controller.
Peter Amstutz [Tue, 19 Aug 2014 15:37:24 +0000 (11:37 -0400)]
3036: Fixed migration to migrate modified_by_client_uuid and
modified_by_user_uuid (because modified_by isn't a column, whoops). Also fills
in in useless updated_at column because it has a NOT NULL constraint.
Peter Amstutz [Tue, 19 Aug 2014 15:36:15 +0000 (11:36 -0400)]
Merge branch 'master' into 3036-collection-uuids
Conflicts:
services/api/app/controllers/arvados/v1/collections_controller.rb
services/api/app/models/collection.rb
Peter Amstutz [Tue, 19 Aug 2014 15:07:00 +0000 (11:07 -0400)]
3036: Updated migration to set modified_at instead of updated_at, added modified_by.
Peter Amstutz [Tue, 19 Aug 2014 15:05:33 +0000 (11:05 -0400)]
Merge branch 'master' into 3504-clients-compatible-with-3036
Peter Amstutz [Tue, 19 Aug 2014 13:40:07 +0000 (09:40 -0400)]
3504: Fix collection chooser. Fix generic link render to use uuid if nothing
else is available. Fix tags for objects other than collections.
Peter Amstutz [Tue, 19 Aug 2014 03:13:19 +0000 (23:13 -0400)]
3504: Fix collection page rendering to work with collections as regular uuids.
Render tags onn project page. Improve helper function for rendering links to
Arvados objects.
Tom Clegg [Mon, 18 Aug 2014 22:58:06 +0000 (18:58 -0400)]
Merge branch '3114-copy-to-project' closes #3114
Tom Clegg [Mon, 18 Aug 2014 22:19:29 +0000 (18:19 -0400)]
3114: Follow return_to param, if given, when redirecting users#show to projects#show.
Don't redirect non-html requests.
Tom Clegg [Mon, 18 Aug 2014 22:18:55 +0000 (18:18 -0400)]
3114: Update test case: searching for own uuid now shows home project.
Tom Clegg [Mon, 18 Aug 2014 22:02:47 +0000 (18:02 -0400)]
3114: Merge branch 'master' into 3114-copy-to-project
Brett Smith [Mon, 18 Aug 2014 18:38:57 +0000 (14:38 -0400)]
3593: Add explanatory comment about Workbench's user cache.
Refs #3593.
Tom Clegg [Mon, 18 Aug 2014 20:51:13 +0000 (16:51 -0400)]
3114: Fix href in json response for generic #create action too. See
7485476.
Tom Clegg [Mon, 18 Aug 2014 18:26:59 +0000 (14:26 -0400)]
Merge branch '2800-pgs' refs #2800
Tom Clegg [Mon, 18 Aug 2014 18:25:47 +0000 (14:25 -0400)]
2800: Sort import statements.
Tom Clegg [Mon, 18 Aug 2014 18:17:49 +0000 (14:17 -0400)]
Merge branch '3604-theme-and-new-user-process' closes #3604
Peter Amstutz [Mon, 18 Aug 2014 18:07:59 +0000 (14:07 -0400)]
3036: Ruby style change, use :search_up and :search_down symbols instead of UP and DOWN constants.
Tom Clegg [Mon, 18 Aug 2014 18:02:42 +0000 (14:02 -0400)]
2800: Restore deleted comment which is still relevant.
Tom Clegg [Mon, 18 Aug 2014 18:01:54 +0000 (14:01 -0400)]
2800: Remove unnecessary sha1. Just use the tuple as an array key.
radhika [Mon, 18 Aug 2014 17:39:41 +0000 (13:39 -0400)]
3188: add data-toggle to link
Tom Clegg [Mon, 18 Aug 2014 17:37:21 +0000 (13:37 -0400)]
3604: Remove useless slice.
Tom Clegg [Mon, 18 Aug 2014 17:35:59 +0000 (13:35 -0400)]
3604: Remove useless loop.
Tom Clegg [Mon, 18 Aug 2014 17:23:03 +0000 (13:23 -0400)]
Do not try to predict uuid of new collection. refs #3261 refs #3504
Tom Clegg [Mon, 18 Aug 2014 17:15:13 +0000 (13:15 -0400)]
Do not throw away permission hints when writing data. refs #3261
Peter Amstutz [Mon, 18 Aug 2014 17:09:14 +0000 (13:09 -0400)]
3036: API server unit tests pass again after adding uniqueness constraints.
Tom Clegg [Mon, 18 Aug 2014 16:52:53 +0000 (12:52 -0400)]
3604: Update comment to reflect lack of built-in default.
Tom Clegg [Mon, 18 Aug 2014 16:51:27 +0000 (12:51 -0400)]
3604: Remove unused style.
Tom Clegg [Mon, 18 Aug 2014 15:39:49 +0000 (11:39 -0400)]
Display progress by default when writing to regular files and stderr isatty. No issue #
radhika [Mon, 18 Aug 2014 15:36:55 +0000 (11:36 -0400)]
3112: add caret to email address dropdown in topnav.
radhika [Mon, 18 Aug 2014 15:15:42 +0000 (11:15 -0400)]
Merge branch 'master' into 3112-report-bug
radhika [Mon, 18 Aug 2014 15:15:06 +0000 (11:15 -0400)]
3112: use alert-success and alert-danger when reporting ajax events after submitting a report.
Peter Amstutz [Mon, 18 Aug 2014 13:39:22 +0000 (09:39 -0400)]
Merge branch '3441-python-keep-log-level' refs #3441
Peter Amstutz [Mon, 18 Aug 2014 12:44:20 +0000 (08:44 -0400)]
3036: Migration will rename rows if necessary to ensure (owner_uuid, name) uniqueness
Tom Clegg [Sun, 17 Aug 2014 21:14:35 +0000 (17:14 -0400)]
3604: Fix user deactivation test.
Tom Clegg [Sun, 17 Aug 2014 20:40:46 +0000 (16:40 -0400)]
3604: Fix tests, and restore ability to view user agreement before completing profile.
Tom Clegg [Sun, 17 Aug 2014 19:26:53 +0000 (15:26 -0400)]
3604: Fix up profile and redirect handling.
Tom Clegg [Sun, 17 Aug 2014 18:34:26 +0000 (14:34 -0400)]
3604: Fix user_agreements behavior, update tests to expect redirects.
Tom Clegg [Sun, 17 Aug 2014 18:10:20 +0000 (14:10 -0400)]
3604: Add test for redirect to welcome page
Tom Clegg [Sun, 17 Aug 2014 18:10:08 +0000 (14:10 -0400)]
3604: Verify permission cache behavior in unsetup test
Tom Clegg [Sun, 17 Aug 2014 18:05:11 +0000 (14:05 -0400)]
3604: Remove test for persistent/cache switch on wrong page.
Tom Clegg [Sun, 17 Aug 2014 18:02:19 +0000 (14:02 -0400)]
3604: Do not check for notifications if user is not even activated.
Tom Clegg [Sun, 17 Aug 2014 17:59:13 +0000 (13:59 -0400)]
3604: Fix stale permission cache by using destroy instead of delete.
Tom Clegg [Sun, 17 Aug 2014 17:50:05 +0000 (13:50 -0400)]
3604: Fix theme support for welcome page
Peter Amstutz [Sun, 17 Aug 2014 04:05:58 +0000 (00:05 -0400)]
3036: Migration adding (owner_uuid, name) uniqueness constraints to
collections, pipeline_templates, pipeline_instances, jobs, groups.
Peter Amstutz [Sun, 17 Aug 2014 03:44:06 +0000 (23:44 -0400)]
3036: API server tests pass
Peter Amstutz [Sun, 17 Aug 2014 01:22:56 +0000 (21:22 -0400)]
3441: Change logging level of nonfatal Keep errors to "debug".
Tom Clegg [Sat, 16 Aug 2014 22:55:20 +0000 (18:55 -0400)]
2800: Clean up exceptions, variable names, handling of discoveryServiceUrl vs host args.
Tom Clegg [Sat, 16 Aug 2014 22:23:25 +0000 (18:23 -0400)]
2800: Merge branch 'master' into 2800-pgs
Tom Clegg [Sat, 16 Aug 2014 06:06:20 +0000 (02:06 -0400)]
Merge branch '2800-python-global-state' into 2800-pgs
Conflicts:
sdk/python/arvados/api.py
Peter Amstutz [Sat, 16 Aug 2014 03:08:31 +0000 (23:08 -0400)]
3036: Restored normalize_collection_uuids removed in
22457e1
Peter Amstutz [Sat, 16 Aug 2014 02:37:59 +0000 (22:37 -0400)]
3036: Remove include_linked from project contents method because 'name' links
are obsolete. Remove tests related to include_linked. Fix docker image lookups.
radhika [Sat, 16 Aug 2014 01:15:00 +0000 (21:15 -0400)]
3112: trailing white space
radhika [Sat, 16 Aug 2014 01:09:15 +0000 (21:09 -0400)]
3112: update tests to test ajax success and associated popup changes when a report is sent.
radhika [Sat, 16 Aug 2014 00:15:25 +0000 (20:15 -0400)]
3112: improve errors test to exercise the report issue button.
radhika [Fri, 15 Aug 2014 23:47:18 +0000 (19:47 -0400)]
Merge branch 'master' into 3112-report-bug
radhika [Fri, 15 Aug 2014 21:36:13 +0000 (17:36 -0400)]
3112: add test to check the existence of "report issue" button in fiddlesticks error page
Peter Amstutz [Fri, 15 Aug 2014 21:11:34 +0000 (17:11 -0400)]
3036: Test fixing work in progress.
radhika [Fri, 15 Aug 2014 20:58:55 +0000 (16:58 -0400)]
3112: add "report issue" button to fiddlesticks error page
Ward Vandewege [Fri, 15 Aug 2014 20:56:34 +0000 (16:56 -0400)]
docker: be a bit smarter in the make clean target, so that we also
accomodate diretories underneath the generated directory.
refs #3551
Brett Smith [Fri, 15 Aug 2014 20:45:21 +0000 (16:45 -0400)]
Merge branch '3593-workbench-exception-rendering'
Closes #3593, #3595.
radhika [Fri, 15 Aug 2014 20:44:46 +0000 (16:44 -0400)]
Merge branch 'master' into 3112-report-bug
Brett Smith [Thu, 14 Aug 2014 17:59:18 +0000 (13:59 -0400)]
3593: Another round of hardening Workbench's render_exception.
render_exception was counting on session[:user] to help render the
error page. We recently excised that, which is turning exceptions
into 500s. This commit restores the session user object, but uses it
only for error rendering, in keeping with the spirit of the previous
revert. This commit also defends against more possible failure cases
in render_exception, and adds a basic test for it.
radhika [Fri, 15 Aug 2014 18:37:17 +0000 (14:37 -0400)]
Merge branch 'master' into 3112-report-bug
radhika [Fri, 15 Aug 2014 17:22:18 +0000 (13:22 -0400)]
3112: add ajax event handling
Tom Clegg [Fri, 15 Aug 2014 14:06:32 +0000 (10:06 -0400)]
gitignore sdk/cli/vendor. refs #3551
Tom Clegg [Fri, 15 Aug 2014 14:05:01 +0000 (10:05 -0400)]
Restore trailing newline in manifest format sanity check.
Amends
3cc80b447efcaf416ea4d6857d6d40583e462ff8
No issue #
Peter Amstutz [Fri, 15 Aug 2014 02:55:11 +0000 (22:55 -0400)]
3036: Adding pre-validation callback to set the portable_data_hash if necessay.
Added validation callback to check that portable_data_hash matches manifest_text.
Peter Amstutz [Fri, 15 Aug 2014 02:53:24 +0000 (22:53 -0400)]
3036: ensure_owner_uuid_is_permitted checks that owner_uuid is a User or Group.
Added comments on permission logic.
Peter Amstutz [Fri, 15 Aug 2014 01:48:26 +0000 (21:48 -0400)]
3036: Fixing uuid -> portable_data_hash in collections controller tests.
Peter Amstutz [Fri, 15 Aug 2014 01:47:48 +0000 (21:47 -0400)]
3036: Remove obsolete 'name' link tests.
Peter Amstutz [Thu, 14 Aug 2014 21:07:12 +0000 (17:07 -0400)]
3036: Split out logic to determine if a user is actually allowed to set the
uuid into validate_uuid. Fix docker/collection/job tests to use
portable_data_hash instead of uuid where appropriate.
radhika [Thu, 14 Aug 2014 20:07:15 +0000 (16:07 -0400)]
3112: minor label updates
Tom Clegg [Thu, 14 Aug 2014 19:30:28 +0000 (15:30 -0400)]
Merge branch '3551-go-layout' closes #3551
Tom Clegg [Thu, 14 Aug 2014 19:23:43 +0000 (15:23 -0400)]
3551: Merge branch 'master' into 3551-go-layout
radhika [Thu, 14 Aug 2014 19:12:17 +0000 (15:12 -0400)]
3112: log when an issue is reported