arvados.git
10 years ago3147: PySDK tests use mock>=1.0 and easier mock side_effect.
Brett Smith [Wed, 10 Sep 2014 20:44:25 +0000 (16:44 -0400)]
3147: PySDK tests use mock>=1.0 and easier mock side_effect.

10 years agono issue # fix failing test to use selenium driver
radhika [Mon, 15 Sep 2014 15:27:45 +0000 (11:27 -0400)]
no issue # fix failing test to use selenium driver

10 years agoUpdated Gemfile to pull in changes from commit:ac594f1 refs #3187
Peter Amstutz [Mon, 15 Sep 2014 13:46:54 +0000 (09:46 -0400)]
Updated Gemfile to pull in changes from commit:ac594f1 refs #3187

10 years agocloses #3654
radhika [Fri, 12 Sep 2014 20:46:51 +0000 (16:46 -0400)]
closes #3654
Merge branch '3654-combine-selections'

10 years agoMerge branch 'master' into 3654-combine-selections
radhika [Fri, 12 Sep 2014 20:43:28 +0000 (16:43 -0400)]
Merge branch 'master' into 3654-combine-selections

10 years agoBug fix: manifests with extra spaces
Tim Pierce [Fri, 12 Sep 2014 19:18:15 +0000 (15:18 -0400)]
Bug fix: manifests with extra spaces

Extend the regular expression to match manifest_text to permit more than
a single space in manifest entries (seen in e.g. 91534558193f42a2f7f8aca872e5a78d+15723)

No issue #

10 years ago3654: disable search icon collection show page rather than hide it when it is not...
radhika [Fri, 12 Sep 2014 18:19:44 +0000 (14:19 -0400)]
3654: disable search icon collection show page rather than hide it when it is not applicable.

10 years agoMerge branch 'master' into 3654-combine-selections
radhika [Fri, 12 Sep 2014 17:26:37 +0000 (13:26 -0400)]
Merge branch 'master' into 3654-combine-selections

10 years agoMerge branch '3187-start-finish-timestamps-tasks-pipelines' refs #3187
Peter Amstutz [Fri, 12 Sep 2014 13:43:34 +0000 (09:43 -0400)]
Merge branch '3187-start-finish-timestamps-tasks-pipelines' refs #3187

10 years agoFixed typo Y% -> %Y
Peter Amstutz [Fri, 12 Sep 2014 13:39:09 +0000 (09:39 -0400)]
Fixed typo Y% -> %Y

10 years ago3654: update tests to match the selection dropdown text changes.
radhika [Thu, 11 Sep 2014 23:37:39 +0000 (19:37 -0400)]
3654: update tests to match the selection dropdown text changes.

10 years agoMerge branch 'master' into 3654-combine-selections
radhika [Thu, 11 Sep 2014 20:19:52 +0000 (16:19 -0400)]
Merge branch 'master' into 3654-combine-selections

10 years ago3654: move the checkbox to the left of the row in collection show page. also, fixed...
radhika [Thu, 11 Sep 2014 20:18:07 +0000 (16:18 -0400)]
3654: move the checkbox to the left of the row in collection show page. also, fixed a bug where the newly added selection dropdown shows up in the collection file chooser popup.

10 years ago3187: Update the task start time when the task actually starts.
Peter Amstutz [Thu, 11 Sep 2014 19:54:50 +0000 (15:54 -0400)]
3187: Update the task start time when the task actually starts.

10 years agoFallout from #3036: the test for the checkbox value on acceptance of the
Ward Vandewege [Thu, 11 Sep 2014 19:01:41 +0000 (15:01 -0400)]
Fallout from #3036: the test for the checkbox value on acceptance of the
user agreement was expecting a keep hash, rather than an Arvados UUID.

This fixes accepting the user agreement (if one or more are present).

refs #3036

10 years ago3654: add a default name to newly created combined collection
radhika [Thu, 11 Sep 2014 19:01:07 +0000 (15:01 -0400)]
3654: add a default name to newly created combined collection

10 years agoMerge branch 'master' into 3654-combine-selections
radhika [Thu, 11 Sep 2014 17:38:00 +0000 (13:38 -0400)]
Merge branch 'master' into 3654-combine-selections

10 years agoClean up manifest whitespace in split-fastq.
Brett Smith [Thu, 11 Sep 2014 15:21:36 +0000 (11:21 -0400)]
Clean up manifest whitespace in split-fastq.

The previous code was generating two spaces between the stream name
and block list, because it had the space from as_manifest() as well as
its own join.  This yielded an invalid manifest.

No issue #.

10 years agoMerge branch 'master' into 3187-start-finish-timestamps-tasks-pipelines
Peter Amstutz [Thu, 11 Sep 2014 13:02:14 +0000 (09:02 -0400)]
Merge branch 'master' into 3187-start-finish-timestamps-tasks-pipelines

10 years agoPrevent PySDK CollectionReader from sending UUIDs to Keep.
Brett Smith [Wed, 10 Sep 2014 21:00:21 +0000 (17:00 -0400)]
Prevent PySDK CollectionReader from sending UUIDs to Keep.

No issue #.  I tickled this while I was working on #3147.  Ward saw
the apparent symptom come up in a Job log, so I'm pushing the fix at
his request.  I have a test prepared in my branch, along with a bunch
of test infrastructure.

10 years ago3846: Improve timeout handling in PySDK KeepClient.
Brett Smith [Wed, 10 Sep 2014 18:22:01 +0000 (14:22 -0400)]
3846: Improve timeout handling in PySDK KeepClient.

* Catch socket errors (including timeouts) and treat them as
  transient with regard to retry logic.
* Increase the default timeout to 5 minutes.  Given how long it can
  take to PUT 64MiB to a proxy and wait for two servers to return
  success, this seems like a reasonable default.  Future improvements
  could set different timeouts based on the request type and whether
  or not we're talking to a proxy.

Closes #3846.

10 years ago3842: Keep::Manifest concatenates file information from manifest.
Brett Smith [Wed, 10 Sep 2014 16:39:58 +0000 (12:39 -0400)]
3842: Keep::Manifest concatenates file information from manifest.

The previous implementation failed to consider the possibility that
file information would be spread across multiple lines of a manifest.
This would cause, e.g., the same file to be yielded many times from
each_file.

This requirement makes it impossible to return file size information
without parsing the entire manifest.  Because of that, I have reworked
the Ruby SDK API so that method names are more consistent with their
performance characteristics.  I have also added some methods to do
some basic file existence checking that do not require parsing the
whole manifest.

Closes #3842.  Refs #3720.

10 years ago3187: Record started_at and finished_at for tasks and pipelines.
Peter Amstutz [Tue, 9 Sep 2014 19:39:55 +0000 (15:39 -0400)]
3187: Record started_at and finished_at for tasks and pipelines.

10 years agoMerge branch 'master' into 3654-combine-selections
radhika [Tue, 9 Sep 2014 19:17:43 +0000 (15:17 -0400)]
Merge branch 'master' into 3654-combine-selections

10 years ago3654: display show icon for files only when the file suffix is one of txt, gif etc...
radhika [Tue, 9 Sep 2014 19:16:23 +0000 (15:16 -0400)]
3654: display show icon for files only when the file suffix is one of txt, gif etc. Also, fixed a bug in summary html where the collection show was failing when finished_at is not available.

10 years ago#3830: Make crunch-job's git calls more robust.
Brett Smith [Tue, 9 Sep 2014 19:16:22 +0000 (15:16 -0400)]
#3830: Make crunch-job's git calls more robust.

* Check git's exit status and only continue on 0.
* Log git's exit status after optional calls.
* Always log the resolved commit hash when it's found.

Hopefully this will prevent a recurrence of refs #3830, or help rule
out some possibilities if it does happen.  Tested by hand on 4xphq.

10 years ago3187: Migration to add started_at and finished_at to job_tasks and pipeline_instances.
Peter Amstutz [Tue, 9 Sep 2014 18:43:29 +0000 (14:43 -0400)]
3187: Migration to add started_at and finished_at to job_tasks and pipeline_instances.

10 years agoMerge branch 'master' into 3654-combine-selections
radhika [Tue, 9 Sep 2014 17:25:12 +0000 (13:25 -0400)]
Merge branch 'master' into 3654-combine-selections

10 years agoMerge branch '3453-arv-list-docker-images' closes #3453, #3472, refs #3125
Peter Amstutz [Tue, 9 Sep 2014 15:58:12 +0000 (11:58 -0400)]
Merge branch '3453-arv-list-docker-images' closes #3453, #3472, refs #3125

10 years ago3453: Rename check_project_exists to desired_project_uuid. Now raises and
Peter Amstutz [Tue, 9 Sep 2014 15:53:48 +0000 (11:53 -0400)]
3453: Rename check_project_exists to desired_project_uuid.  Now raises and
catches distinct apiclient.errors.Error, ValueError errors for project not
found or invalid uuid.

10 years agoMerge branch '3586-job-priority' closes #3586
Peter Amstutz [Tue, 9 Sep 2014 13:25:27 +0000 (09:25 -0400)]
Merge branch '3586-job-priority' closes #3586

10 years agoMerge branch 'master' into 3586-job-priority closes #3586
Peter Amstutz [Mon, 8 Sep 2014 20:56:51 +0000 (16:56 -0400)]
Merge branch 'master' into 3586-job-priority closes #3586

10 years agoMerge branch '3644-arv-mount-projects' closes #3644
Peter Amstutz [Mon, 8 Sep 2014 20:55:47 +0000 (16:55 -0400)]
Merge branch '3644-arv-mount-projects' closes #3644

10 years ago3453: Refactored arv-put to remove support for name links, correctly use
Peter Amstutz [Mon, 8 Sep 2014 20:54:49 +0000 (16:54 -0400)]
3453: Refactored arv-put to remove support for name links, correctly use
ensure_name_unique to prevent name collisions.  arv-keepdocker should now
correctly handle cases where the user provides a image hash instead of
repository/tag. Fixed tests.

10 years ago3644: Update tests broken by merge
Peter Amstutz [Mon, 8 Sep 2014 19:54:35 +0000 (15:54 -0400)]
3644: Update tests broken by merge

10 years ago3823: bug fixes for arvados-bcbio-nextgen.py
Tim Pierce [Mon, 8 Sep 2014 19:47:54 +0000 (15:47 -0400)]
3823: bug fixes for arvados-bcbio-nextgen.py

Refs #3823

10 years ago3644: Moved some common regex patterns into SDK
Peter Amstutz [Mon, 8 Sep 2014 19:37:55 +0000 (15:37 -0400)]
3644: Moved some common regex patterns into SDK

10 years agoMerge branch 'master' into 3644-arv-mount-projects
Peter Amstutz [Mon, 8 Sep 2014 19:07:05 +0000 (15:07 -0400)]
Merge branch 'master' into 3644-arv-mount-projects

10 years ago3644: Restore 'tag' tests and add 'SharedDirectory' and 'HomeDirectory' tests.
Peter Amstutz [Mon, 8 Sep 2014 19:06:33 +0000 (15:06 -0400)]
3644: Restore 'tag' tests and add 'SharedDirectory' and 'HomeDirectory' tests.
All tests should pass now.

10 years agoMerge branch '3663-collection-reader-performance'
Tim Pierce [Mon, 8 Sep 2014 18:06:43 +0000 (14:06 -0400)]
Merge branch '3663-collection-reader-performance'

Closes #3663.

10 years agoMerge branch 'master' into 3654-combine-selections
radhika [Mon, 8 Sep 2014 14:56:51 +0000 (10:56 -0400)]
Merge branch 'master' into 3654-combine-selections

10 years ago3453: Add ensure_unique_name=True to collection create.
Peter Amstutz [Mon, 8 Sep 2014 14:56:19 +0000 (10:56 -0400)]
3453: Add ensure_unique_name=True to collection create.

10 years ago3654: redirection to newly created collection is now working.
radhika [Mon, 8 Sep 2014 14:56:12 +0000 (10:56 -0400)]
3654: redirection to newly created collection is now working.

10 years agoMerge branch 'master' into 3453-arv-list-docker-images
Peter Amstutz [Mon, 8 Sep 2014 14:53:52 +0000 (10:53 -0400)]
Merge branch 'master' into 3453-arv-list-docker-images

10 years agoAdded create#ensure_unique_name to discovery document. "Add a subproject"
Peter Amstutz [Mon, 8 Sep 2014 14:53:32 +0000 (10:53 -0400)]
Added create#ensure_unique_name to discovery document.  "Add a subproject"
button now uses "ensure_unique_name" to avoid errors when the user creates more
than one project called "New project".  refs #3822

10 years ago3453: Create links and collection objects in the specified project, even if
Peter Amstutz [Mon, 8 Sep 2014 14:43:49 +0000 (10:43 -0400)]
3453: Create links and collection objects in the specified project, even if
the docker image has already been uploaded to some other project.

10 years agoMerge branch 'master' into 3654-combine-selections
radhika [Sat, 6 Sep 2014 19:53:17 +0000 (15:53 -0400)]
Merge branch 'master' into 3654-combine-selections

10 years ago3654: slight update to redirect to newly created collection
radhika [Sat, 6 Sep 2014 19:51:34 +0000 (15:51 -0400)]
3654: slight update to redirect to newly created collection

10 years ago3654: little cleanup around the post method
radhika [Sat, 6 Sep 2014 04:36:32 +0000 (00:36 -0400)]
3654: little cleanup around the post method

10 years ago3654: use POST method to combine selections.
radhika [Sat, 6 Sep 2014 04:15:51 +0000 (00:15 -0400)]
3654: use POST method to combine selections.

10 years agoUpdated Gemfile again with published package version. refs #3822
Peter Amstutz [Fri, 5 Sep 2014 21:02:20 +0000 (17:02 -0400)]
Updated Gemfile again with published package version.  refs #3822

10 years agoMerge branch '3822-ensure-unique-names' refs #3822
Peter Amstutz [Fri, 5 Sep 2014 20:52:59 +0000 (16:52 -0400)]
Merge branch '3822-ensure-unique-names' refs #3822

Conflicts:
services/api/Gemfile
services/api/Gemfile.lock

10 years ago3822: Updated Gemfile
Peter Amstutz [Fri, 5 Sep 2014 20:48:25 +0000 (16:48 -0400)]
3822: Updated Gemfile

10 years ago3822: Fixed use of string instead of symbol in hash, added missing list separator.
Peter Amstutz [Fri, 5 Sep 2014 20:46:26 +0000 (16:46 -0400)]
3822: Fixed use of string instead of symbol in hash, added missing list separator.

10 years ago3822: Added 'ensure_unique_name' option to #create method for API server to
Peter Amstutz [Fri, 5 Sep 2014 20:23:38 +0000 (16:23 -0400)]
3822: Added 'ensure_unique_name' option to #create method for API server to
choose a unique name when there is a name collision in the database.
arv-run-pipeline-instance checks to see if there is an output file with the
same name and contents, and uses 'ensure_unique_name' when creating collection.

10 years ago3654: combine options is enabled when only data collections are selected in project...
radhika [Fri, 5 Sep 2014 20:00:24 +0000 (16:00 -0400)]
3654: combine options is enabled when only data collections are selected in project view.

10 years ago3654: add selection dropdown to collections page
radhika [Fri, 5 Sep 2014 19:17:40 +0000 (15:17 -0400)]
3654: add selection dropdown to collections page

10 years ago3654: test update
radhika [Fri, 5 Sep 2014 19:10:34 +0000 (15:10 -0400)]
3654: test update

10 years agoMerge branch 'master' into 3654-combine-selections
radhika [Fri, 5 Sep 2014 19:00:53 +0000 (15:00 -0400)]
Merge branch 'master' into 3654-combine-selections

10 years ago3654: add selection dropdown to collections page
radhika [Fri, 5 Sep 2014 18:58:05 +0000 (14:58 -0400)]
3654: add selection dropdown to collections page

10 years ago3654: add selection dropdown to collections page
radhika [Fri, 5 Sep 2014 18:45:07 +0000 (14:45 -0400)]
3654: add selection dropdown to collections page

10 years ago3654: add selection dropdown to collection#show page
radhika [Fri, 5 Sep 2014 18:17:08 +0000 (14:17 -0400)]
3654: add selection dropdown to collection#show page

10 years ago3654: add integration and funtional tests for combining collections and collection...
radhika [Fri, 5 Sep 2014 18:03:11 +0000 (14:03 -0400)]
3654: add integration and funtional tests for combining collections and collection contents.

10 years agoReplace all remaining references to Clinical Future with Curoverse.
Ward Vandewege [Fri, 5 Sep 2014 17:18:28 +0000 (13:18 -0400)]
Replace all remaining references to Clinical Future with Curoverse.

no issue #

10 years ago3720: Update arvados Gem versions.
Brett Smith [Fri, 5 Sep 2014 15:57:07 +0000 (11:57 -0400)]
3720: Update arvados Gem versions.

Gemfiles need to be in sync with the latest commit on master.
Refs #3720.

10 years ago3644: minor control block indentation fix.
Peter Amstutz [Fri, 5 Sep 2014 15:45:10 +0000 (11:45 -0400)]
3644: minor control block indentation fix.

10 years ago3644: Changed so ctime == mtime because ctime is not creation time (arg!).
Peter Amstutz [Fri, 5 Sep 2014 15:43:41 +0000 (11:43 -0400)]
3644: Changed so ctime == mtime because ctime is not creation time (arg!).
Added atime.  Tweaked timestamps behavior be a bit more useful.

10 years agoMerge branch '3720-big-manifest-performance-wip'
Brett Smith [Fri, 5 Sep 2014 15:39:28 +0000 (11:39 -0400)]
Merge branch '3720-big-manifest-performance-wip'

Closes #3720, #3806.

10 years ago3720: Limit Workbench file rendering for large Collections.
Brett Smith [Wed, 3 Sep 2014 21:52:00 +0000 (17:52 -0400)]
3720: Limit Workbench file rendering for large Collections.

Rendering too many files can cause rendering to take too long, and
there's not much point because it can really strain browsers too.
Arbitrarily cap rendering at 10,000 files.

10 years ago3720: Refactor manifest parsing from API server to Ruby SDK.
Brett Smith [Fri, 29 Aug 2014 21:37:13 +0000 (17:37 -0400)]
3720: Refactor manifest parsing from API server to Ruby SDK.

To date, the API server has been parsing manifests and returning
parsed information in the files attribute.  That's convenient, but
causes performance problems in large Collections.  Profiling indicates
that most of the API server's response time is spent in the
as_api_response method; rendering the same information twice really
hurts.

This commits removes the API server's need to always parse manifests,
and moves the parsing code to the Ruby SDK.  Both the API server and
Workbench use this Gem to parse manifests on an as-needed basis.
This, combined with improvements to the new Keep::Manifest class, lays
the groundwork for future performance gains.

10 years ago3720: arvados-cli Gemfile refers to gemspec.
Brett Smith [Wed, 3 Sep 2014 21:11:51 +0000 (17:11 -0400)]
3720: arvados-cli Gemfile refers to gemspec.

This change helps avoid loops where you have to have arvados-cli
installed to build arvados-cli.

10 years ago3720: Clean up+skip Ruby SDK tests.
Brett Smith [Wed, 3 Sep 2014 18:57:25 +0000 (14:57 -0400)]
3720: Clean up+skip Ruby SDK tests.

First I changed these to get them passing again.  With that done, I
added the skip.  We're not currently running these tests, and getting
them going the right way again (e.g., with run_test_server.py or
mocks) is out of scope for my current task.

10 years ago3453: Now lists images by default if called with no parameters. Fixed reported
Peter Amstutz [Fri, 5 Sep 2014 14:16:17 +0000 (10:16 -0400)]
3453: Now lists images by default if called with no parameters.  Fixed reported
timestamps on images without a 'timestamp' property.  Added 'Docker image'
prefix to default name.  Renamed variables in list_images_in_arv() to be more
friendly.

10 years agoMerge branch 'master' into 3654-combine-selections
radhika [Fri, 5 Sep 2014 13:22:36 +0000 (09:22 -0400)]
Merge branch 'master' into 3654-combine-selections

10 years agoMerge branch '3710-combine-selections-bug' refs #3710
Peter Amstutz [Fri, 5 Sep 2014 13:18:06 +0000 (09:18 -0400)]
Merge branch '3710-combine-selections-bug' refs #3710

10 years ago3710: Refactored code to reduce redundancy. Use select() to get the manifest
Peter Amstutz [Fri, 5 Sep 2014 13:15:48 +0000 (09:15 -0400)]
3710: Refactored code to reduce redundancy.  Use select() to get the manifest
text instead of reloading each object for performance.

10 years ago3644: fuse_arvados test pass.
Peter Amstutz [Fri, 5 Sep 2014 12:47:33 +0000 (08:47 -0400)]
3644: fuse_arvados test pass.

10 years agoRemove name and description columns on jobs table introduced accidentally
Peter Amstutz [Fri, 5 Sep 2014 01:10:59 +0000 (21:10 -0400)]
Remove name and description columns on jobs table introduced accidentally
(refs #3036).  Fixed workbench so tests pass.

10 years agoMerge branch 'master' into 3654-combine-selections
radhika [Thu, 4 Sep 2014 20:58:51 +0000 (16:58 -0400)]
Merge branch 'master' into 3654-combine-selections

10 years ago3710: handle the scenario where files from named collections are selected
radhika [Thu, 4 Sep 2014 20:55:36 +0000 (16:55 -0400)]
3710: handle the scenario where files from named collections are selected

10 years ago3704: Treat project filters consistently in Workbench chooser.
Brett Smith [Thu, 4 Sep 2014 20:05:57 +0000 (16:05 -0400)]
3704: Treat project filters consistently in Workbench chooser.

Before this, a chooser that was loaded on a specific project would
return empty results if the user selected a different project.  This
is because it would search for items with two different owner_uuids,
both the project selected at load time, and the project the user
selected later.  This patch fixes that by separating the project
filter from other filters, and preseeding it in the same place where
it's updated by the project selection AJAX.  Closes #3704, #3778.

10 years ago3663: update test_file_reader unit test
Tim Pierce [Thu, 4 Sep 2014 18:55:15 +0000 (14:55 -0400)]
3663: update test_file_reader unit test

Because StreamFileReader.read() calls are now aligned on block
boundaries, the unit test needs to take that into account when testing
the results of individual reads.

10 years ago3644: Add --by-id to invocation of arv-mount in crunch-job to get the same
Peter Amstutz [Thu, 4 Sep 2014 18:23:46 +0000 (14:23 -0400)]
3644: Add --by-id to invocation of arv-mount in crunch-job to get the same
behavior as before.

10 years ago3644: Added choose-your-own-adventure README files to the --all and --by-id
Peter Amstutz [Thu, 4 Sep 2014 18:22:25 +0000 (14:22 -0400)]
3644: Added choose-your-own-adventure README files to the --all and --by-id
directories.  Regular expressions are now compiled once at the top for
efficiency and readability.

10 years ago3710: update the combine_selected_files_into_collection method to also handle the...
radhika [Thu, 4 Sep 2014 18:06:34 +0000 (14:06 -0400)]
3710: update the combine_selected_files_into_collection method to also handle the scenarios where a collection uuid or "collection uuid/filename" is passed.

10 years ago3663: StreamFileReader.read() returns just one chunk
Tim Pierce [Thu, 4 Sep 2014 17:54:42 +0000 (13:54 -0400)]
3663: StreamFileReader.read() returns just one chunk

The StreamFileReader read() call reads just a single chunk from the
input stream on each call, instead of reading as many bytes as possible.

10 years ago3644: Change metafiles to .arvados#collection and .arvados#project. Change
Peter Amstutz [Thu, 4 Sep 2014 17:31:26 +0000 (13:31 -0400)]
3644: Change metafiles to .arvados#collection and .arvados#project.  Change
--by-hash to be --by-id since it works with both uuids and portable data
hashes.

10 years agoRevert 2 hunks from a5819ec1e48fba90658fcf676ffc50c1f216d484, thus
Ward Vandewege [Thu, 4 Sep 2014 15:33:36 +0000 (11:33 -0400)]
Revert 2 hunks from a5819ec1e48fba90658fcf676ffc50c1f216d484, thus
un-breaking crunch-job in two important ways:

* task stdout and stderr are propagated again

* tasks can actually run because crunch-src is available in the docker
  container again

no issue #

10 years ago3654: remove "Combine selected collections and files into a new collection" option...
radhika [Thu, 4 Sep 2014 15:07:44 +0000 (11:07 -0400)]
3654: remove "Combine selected collections and files into a new collection" option from clippy.

10 years ago3644: Add threadsafe arvados api access. arv-mount now releases llfuse global
Peter Amstutz [Thu, 4 Sep 2014 14:59:03 +0000 (10:59 -0400)]
3644: Add threadsafe arvados api access.  arv-mount now releases llfuse global
lock when performing network requests.

10 years ago3654: add selection dropdown to collections pages
radhika [Thu, 4 Sep 2014 14:55:12 +0000 (10:55 -0400)]
3654: add selection dropdown to collections pages

10 years ago3644: Tweak CollectionReader manifest text regular expression to use multiline
Peter Amstutz [Thu, 4 Sep 2014 14:51:04 +0000 (10:51 -0400)]
3644: Tweak CollectionReader manifest text regular expression to use multiline
match.

10 years ago3644: Tested, fixed various mount modes.
Peter Amstutz [Wed, 3 Sep 2014 19:55:06 +0000 (15:55 -0400)]
3644: Tested, fixed various mount modes.

10 years ago3654: add "combine selections" option to project#show page.
radhika [Wed, 3 Sep 2014 19:35:53 +0000 (15:35 -0400)]
3654: add "combine selections" option to project#show page.

10 years ago3644: Default mount mode now includes home, shared, by_hash, and by_tag.
Peter Amstutz [Wed, 3 Sep 2014 19:24:15 +0000 (15:24 -0400)]
3644: Default mount mode now includes home, shared, by_hash, and by_tag.

10 years ago3644: Re-added support for files with json contents of arvados objects.
Peter Amstutz [Wed, 3 Sep 2014 18:10:13 +0000 (14:10 -0400)]
3644: Re-added support for files with json contents of arvados objects.
Changed block size reported by getattr() use 512 byte blocks which is seems to
be necessary to get 'du' to compute the right results.

10 years agocloses #3637
radhika [Wed, 3 Sep 2014 16:48:17 +0000 (12:48 -0400)]
closes #3637
Merge branch '3637-copy-selections'

10 years ago3637: add one more test that verifies that the copy action is disabled when a subproj...
radhika [Wed, 3 Sep 2014 16:14:03 +0000 (12:14 -0400)]
3637: add one more test that verifies that the copy action is disabled when a subproject under a project is selected.

10 years ago3644: Collections work again, added .portable_data_hash and .manifest_text
Peter Amstutz [Wed, 3 Sep 2014 15:39:09 +0000 (11:39 -0400)]
3644: Collections work again, added .portable_data_hash and .manifest_text
virtual files to detect if a directory is a collection.

10 years ago3644: HomeDirectory and ProjectDirectories work, added filename sanitization.
Peter Amstutz [Wed, 3 Sep 2014 14:26:50 +0000 (10:26 -0400)]
3644: HomeDirectory and ProjectDirectories work, added filename sanitization.