]> git.arvados.org - arvados.git/log
arvados.git
12 years agoadd "incomplete" alert boxes
Tom Clegg [Fri, 12 Apr 2013 23:20:50 +0000 (16:20 -0700)]
add "incomplete" alert boxes

12 years agofix favicon path
Tom Clegg [Thu, 11 Apr 2013 19:19:01 +0000 (12:19 -0700)]
fix favicon path

12 years agochange favicon
Tom Clegg [Thu, 11 Apr 2013 19:15:41 +0000 (12:15 -0700)]
change favicon

12 years agofix doc header alignment some more
Tom Clegg [Thu, 11 Apr 2013 18:06:29 +0000 (11:06 -0700)]
fix doc header alignment some more

12 years agofix doc header alignment some more
Tom Clegg [Thu, 11 Apr 2013 17:53:52 +0000 (10:53 -0700)]
fix doc header alignment some more

12 years agofix doc front page title/text alignment
Tom Clegg [Thu, 11 Apr 2013 17:49:43 +0000 (10:49 -0700)]
fix doc front page title/text alignment

12 years agofix doc front page subtitle word wrap
Tom Clegg [Thu, 11 Apr 2013 16:51:33 +0000 (09:51 -0700)]
fix doc front page subtitle word wrap

12 years agofix doc front page header image
Tom Clegg [Thu, 11 Apr 2013 16:41:14 +0000 (09:41 -0700)]
fix doc front page header image

12 years agomobile fix for doc side nav
Tom Clegg [Thu, 11 Apr 2013 15:54:55 +0000 (08:54 -0700)]
mobile fix for doc side nav

12 years agotweak page titles, add link to arvados.org
Tom Clegg [Thu, 11 Apr 2013 06:08:30 +0000 (23:08 -0700)]
tweak page titles, add link to arvados.org

12 years agorework front page
Tom Clegg [Thu, 11 Apr 2013 05:42:43 +0000 (22:42 -0700)]
rework front page

12 years agoadd api/Collections and unlink missing resources on index page
Tom Clegg [Thu, 11 Apr 2013 02:13:30 +0000 (19:13 -0700)]
add api/Collections and unlink missing resources on index page

12 years agorename explorer -> workbench
Tom Clegg [Wed, 10 Apr 2013 21:45:21 +0000 (14:45 -0700)]
rename explorer -> workbench

12 years agofix links, rename orvos
Tom Clegg [Wed, 10 Apr 2013 20:41:43 +0000 (13:41 -0700)]
fix links, rename orvos

12 years agofix titles of api/Jobs and api/Links pages
Tom Clegg [Wed, 10 Apr 2013 20:38:14 +0000 (13:38 -0700)]
fix titles of api/Jobs and api/Links pages

12 years agoadd api/Jobs
Tom Clegg [Wed, 10 Apr 2013 20:34:35 +0000 (13:34 -0700)]
add api/Jobs

12 years agoadd api/Links
Tom Clegg [Wed, 10 Apr 2013 20:30:01 +0000 (13:30 -0700)]
add api/Links

12 years agorename api resources pages
Tom Clegg [Wed, 10 Apr 2013 20:23:39 +0000 (13:23 -0700)]
rename api resources pages

12 years agofix up api index
Tom Clegg [Wed, 10 Apr 2013 20:11:12 +0000 (13:11 -0700)]
fix up api index

12 years agoxref to list of resources
Tom Clegg [Wed, 10 Apr 2013 20:01:33 +0000 (13:01 -0700)]
xref to list of resources

12 years agotweak front page
Tom Clegg [Wed, 10 Apr 2013 19:48:51 +0000 (12:48 -0700)]
tweak front page

12 years agouse bootstrap nav-list instead of hacked nav-stacked
Tom Clegg [Wed, 10 Apr 2013 19:36:46 +0000 (12:36 -0700)]
use bootstrap nav-list instead of hacked nav-stacked

12 years agosplit User into User Guide and API Reference
Tom Clegg [Wed, 10 Apr 2013 19:09:49 +0000 (12:09 -0700)]
split User into User Guide and API Reference

12 years agofix ssh link
Tom Clegg [Wed, 10 Apr 2013 18:26:41 +0000 (11:26 -0700)]
fix ssh link

12 years agoadd Keep vocabulary
Tom Clegg [Wed, 10 Apr 2013 17:42:07 +0000 (10:42 -0700)]
add Keep vocabulary

12 years agoadd job pages
Tom Clegg [Wed, 10 Apr 2013 15:57:27 +0000 (08:57 -0700)]
add job pages

12 years agoMerge branch 'explorer'
Ward Vandewege [Wed, 10 Apr 2013 16:08:34 +0000 (12:08 -0400)]
Merge branch 'explorer'

12 years agomoved explorer into new directory structure
Ward Vandewege [Wed, 10 Apr 2013 16:08:18 +0000 (12:08 -0400)]
moved explorer into new directory structure

12 years agoMerge branch 'clients'
Ward Vandewege [Wed, 10 Apr 2013 15:40:48 +0000 (11:40 -0400)]
Merge branch 'clients'

12 years agoreorganized repo structure
Ward Vandewege [Wed, 10 Apr 2013 15:40:35 +0000 (11:40 -0400)]
reorganized repo structure

12 years agomoved api server code into new directory structure
Ward Vandewege [Wed, 10 Apr 2013 15:26:58 +0000 (11:26 -0400)]
moved api server code into new directory structure

12 years agoadd a bunch of API pages
Tom Clegg [Wed, 10 Apr 2013 02:07:08 +0000 (19:07 -0700)]
add a bunch of API pages

12 years agohighlight active side nav
Tom Clegg [Wed, 10 Apr 2013 01:10:56 +0000 (18:10 -0700)]
highlight active side nav

12 years agouse arvados.org favicon
Tom Clegg [Wed, 10 Apr 2013 00:09:12 +0000 (17:09 -0700)]
use arvados.org favicon

12 years agoadd provenance, using git, using keep pages
Tom Clegg [Tue, 9 Apr 2013 22:17:13 +0000 (15:17 -0700)]
add provenance, using git, using keep pages

12 years agorename ssh keys -> ssh access
Tom Clegg [Tue, 9 Apr 2013 21:44:00 +0000 (14:44 -0700)]
rename ssh keys -> ssh access

12 years agotweak front page of doc
Tom Clegg [Tue, 9 Apr 2013 21:30:46 +0000 (14:30 -0700)]
tweak front page of doc

12 years agoadd ssh keys page
Tom Clegg [Tue, 9 Apr 2013 21:27:25 +0000 (14:27 -0700)]
add ssh keys page

12 years agofix "active section" style
Tom Clegg [Tue, 9 Apr 2013 20:45:37 +0000 (13:45 -0700)]
fix "active section" style

12 years agoadd jekyll doc tree
Tom Clegg [Tue, 9 Apr 2013 19:15:30 +0000 (12:15 -0700)]
add jekyll doc tree

12 years agoadded initial python wh file
Samuel Shapiro [Fri, 29 Mar 2013 17:32:53 +0000 (13:32 -0400)]
added initial python wh file

12 years agoset instance.success when finished. refs #1424
Tom Clegg [Wed, 27 Mar 2013 19:26:45 +0000 (12:26 -0700)]
set instance.success when finished. refs #1424

12 years agoadd --create-only and --instance arguments. refs #1448
Tom Clegg [Wed, 27 Mar 2013 00:14:59 +0000 (17:14 -0700)]
add --create-only and --instance arguments. refs #1448

12 years agotweak serialized attribute search. refs #1447
Tom Clegg [Wed, 27 Mar 2013 00:43:23 +0000 (17:43 -0700)]
tweak serialized attribute search. refs #1447

12 years agopass component[:script_parameters] to server when searching for jobs. refs #1447
Tom Clegg [Tue, 26 Mar 2013 23:39:19 +0000 (16:39 -0700)]
pass component[:script_parameters] to server when searching for jobs. refs #1447

12 years agohack search on serialized fields. refs #1447
Tom Clegg [Tue, 26 Mar 2013 23:38:07 +0000 (16:38 -0700)]
hack search on serialized fields. refs #1447

12 years agofix crash on non-string job#script_parameters
Tom Clegg [Tue, 26 Mar 2013 23:37:29 +0000 (16:37 -0700)]
fix crash on non-string job#script_parameters

12 years agopass component[:script_version_descends_from] to server when searching for jobs....
Tom Clegg [Tue, 26 Mar 2013 23:10:04 +0000 (16:10 -0700)]
pass component[:script_version_descends_from] to server when searching for jobs. refs #1445

12 years agoTweak git commit lookup. refs #1445
Tom Clegg [Tue, 26 Mar 2013 22:47:52 +0000 (15:47 -0700)]
Tweak git commit lookup. refs #1445

12 years agoSupport searching jobs by script_version_descends_from. refs #1445
Tom Clegg [Tue, 26 Mar 2013 22:24:37 +0000 (15:24 -0700)]
Support searching jobs by script_version_descends_from. refs #1445

12 years agoadd config.git_repositories_dir. refs #1445
Tom Clegg [Mon, 25 Mar 2013 18:51:47 +0000 (11:51 -0700)]
add config.git_repositories_dir. refs #1445

12 years agodo not include ApiClient* in discovery document. refs #1405 refs #1406
Tom Clegg [Mon, 25 Mar 2013 18:50:53 +0000 (11:50 -0700)]
do not include ApiClient* in discovery document. refs #1405 refs #1406

12 years agoshow pipeline instance uuid in plain text status. refs #1440
Tom Clegg [Mon, 25 Mar 2013 21:20:29 +0000 (14:20 -0700)]
show pipeline instance uuid in plain text status. refs #1440

12 years agoMerge branch 'master' of git.clinicalfuture.com:clients
Ward Vandewege [Mon, 25 Mar 2013 21:18:14 +0000 (17:18 -0400)]
Merge branch 'master' of git.clinicalfuture.com:clients

12 years agoMake subcommands singular. Slight layout improvement, too.
Ward Vandewege [Mon, 25 Mar 2013 21:17:25 +0000 (17:17 -0400)]
Make subcommands singular. Slight layout improvement, too.

12 years agocreate/update PipelineInstance while working. some code cleanup. refs #1440
Tom Clegg [Mon, 25 Mar 2013 19:59:24 +0000 (12:59 -0700)]
create/update PipelineInstance while working. some code cleanup. refs #1440

12 years agoadd pipeline_instances#index, fix #show to work with new-school pipelines. refs ...
Tom Clegg [Mon, 25 Mar 2013 21:13:16 +0000 (14:13 -0700)]
add pipeline_instances#index, fix #show to work with new-school pipelines. refs #1421 refs #1422

12 years agoFix up the discovery document - make sure we define 'items' in the the
Ward Vandewege [Mon, 25 Mar 2013 20:47:36 +0000 (16:47 -0400)]
Fix up the discovery document - make sure we define 'items' in the the
various ObjectList definitions.

Also really fix up the issue with ObjectList vs ObjectsList.

This makes the Python SDK happy.

12 years agoMake sure to pluralized object names in the List method as listed in the
Ward Vandewege [Mon, 25 Mar 2013 19:50:34 +0000 (15:50 -0400)]
Make sure to pluralized object names in the List method as listed in the
REST discovery document.

This makes the Python SDK happy.

12 years agoaccept pipeline template uuid in --template argument, improve docs. refs #1424
Tom Clegg [Mon, 25 Mar 2013 19:34:46 +0000 (12:34 -0700)]
accept pipeline template uuid in --template argument, improve docs. refs #1424

12 years agorename wh-pipeline to wh-run-pipeline-instance. refs #1424
Tom Clegg [Mon, 25 Mar 2013 19:10:58 +0000 (12:10 -0700)]
rename wh-pipeline to wh-run-pipeline-instance. refs #1424

12 years agotweak generic object display
Tom Clegg [Mon, 25 Mar 2013 18:44:06 +0000 (11:44 -0700)]
tweak generic object display

12 years agoadd /pipeline_templates index page. refs #1420
Tom Clegg [Mon, 25 Mar 2013 18:21:43 +0000 (11:21 -0700)]
add /pipeline_templates index page. refs #1420

12 years agofix rdoc. refs #1424
Tom Clegg [Mon, 25 Mar 2013 07:24:54 +0000 (00:24 -0700)]
fix rdoc. refs #1424

12 years agoadd wh-pipeline. refs #1424
Tom Clegg [Fri, 22 Mar 2013 21:42:09 +0000 (14:42 -0700)]
add wh-pipeline. refs #1424

12 years agoshow PGP huID tags. refs #1408 refs #1419
Tom Clegg [Fri, 22 Mar 2013 06:50:44 +0000 (23:50 -0700)]
show PGP huID tags. refs #1408 refs #1419

12 years agotweak table border
Tom Clegg [Fri, 22 Mar 2013 05:40:41 +0000 (22:40 -0700)]
tweak table border

12 years agoadd names and keep flags to groups -> collections list. refs #1408
Tom Clegg [Fri, 22 Mar 2013 04:18:08 +0000 (21:18 -0700)]
add names and keep flags to groups -> collections list. refs #1408

12 years agouse label instead of btn for labels on collections#show
Tom Clegg [Thu, 21 Mar 2013 18:52:00 +0000 (11:52 -0700)]
use label instead of btn for labels on collections#show

12 years agoadd Collections tab to groups#show page
Tom Clegg [Thu, 21 Mar 2013 17:14:34 +0000 (10:14 -0700)]
add Collections tab to groups#show page

12 years agoadd "usual orvos object details" tab on collections#show page
Tom Clegg [Thu, 21 Mar 2013 17:14:02 +0000 (10:14 -0700)]
add "usual orvos object details" tab on collections#show page

12 years agouse ORVOS_API_TOKEN environment variable in rails console
Tom Clegg [Thu, 21 Mar 2013 17:13:20 +0000 (10:13 -0700)]
use ORVOS_API_TOKEN environment variable in rails console

12 years agoadd Link to known-types list
Tom Clegg [Thu, 21 Mar 2013 15:59:14 +0000 (08:59 -0700)]
add Link to known-types list

12 years agoDo not assume
Ward Vandewege [Wed, 20 Mar 2013 19:52:14 +0000 (15:52 -0400)]
Do not assume

  session[:api_client_authorization_id]

exists when session[:user_id] is set.

12 years agofix list logic. refs #1405 refs #1406
Tom Clegg [Wed, 20 Mar 2013 02:56:17 +0000 (19:56 -0700)]
fix list logic. refs #1405 refs #1406

12 years agoadd delete method. refs #1406
Tom Clegg [Wed, 20 Mar 2013 02:50:10 +0000 (19:50 -0700)]
add delete method. refs #1406

12 years agoadd update method. refs #1406
Tom Clegg [Wed, 20 Mar 2013 02:46:11 +0000 (19:46 -0700)]
add update method. refs #1406

12 years agogeneralize output logic. refs #1405 refs #1406
Tom Clegg [Wed, 20 Mar 2013 02:42:55 +0000 (19:42 -0700)]
generalize output logic. refs #1405 refs #1406

12 years agoadd create method. refs #1406
Tom Clegg [Wed, 20 Mar 2013 02:34:56 +0000 (19:34 -0700)]
add create method. refs #1406

12 years agoimprove error checking
Tom Clegg [Wed, 20 Mar 2013 02:34:37 +0000 (19:34 -0700)]
improve error checking

12 years agohandle parameter types :object, :datetime, :text. refs #1405 refs #1406
Tom Clegg [Wed, 20 Mar 2013 02:34:01 +0000 (19:34 -0700)]
handle parameter types :object, :datetime, :text. refs #1405 refs #1406

12 years agoHandle errors more gracefully.
Ward Vandewege [Wed, 20 Mar 2013 01:38:48 +0000 (21:38 -0400)]
Handle errors more gracefully.

12 years agoDo not blow up when a default value for an argument is a boolean.
Ward Vandewege [Wed, 20 Mar 2013 01:25:28 +0000 (21:25 -0400)]
Do not blow up when a default value for an argument is a boolean.

12 years agoNow make sure we are really using the new rest file. refs #1406
Ward Vandewege [Wed, 20 Mar 2013 01:23:49 +0000 (21:23 -0400)]
Now make sure we are really using the new rest file. refs #1406

12 years agofix call to api_client.uuid when api_client is nil
Tom Clegg [Wed, 20 Mar 2013 01:08:26 +0000 (18:08 -0700)]
fix call to api_client.uuid when api_client is nil

12 years agoMerge branch 'master' of git.clinicalfuture.com:orvos-server
Ward Vandewege [Wed, 20 Mar 2013 01:07:24 +0000 (21:07 -0400)]
Merge branch 'master' of git.clinicalfuture.com:orvos-server

12 years agoMove auto-generated REST discovery document to the right path.
Ward Vandewege [Wed, 20 Mar 2013 01:06:44 +0000 (21:06 -0400)]
Move auto-generated REST discovery document to the right path.

refs #1406

12 years agouse new permission methods to check model transactions. refs #1415
Tom Clegg [Wed, 20 Mar 2013 00:38:35 +0000 (17:38 -0700)]
use new permission methods to check model transactions. refs #1415

12 years agoadd per-user and per-session default_owner. refs #1415
Tom Clegg [Wed, 20 Mar 2013 00:18:03 +0000 (17:18 -0700)]
add per-user and per-session default_owner. refs #1415

12 years agofix exception when tasks_summary[:running] == nil
Tom Clegg [Tue, 19 Mar 2013 21:07:10 +0000 (14:07 -0700)]
fix exception when tasks_summary[:running] == nil

12 years agorename job steps to job tasks. refs #1416
Tom Clegg [Tue, 19 Mar 2013 20:30:10 +0000 (13:30 -0700)]
rename job steps to job tasks. refs #1416

12 years agorename job steps to job tasks. refs #1416
Tom Clegg [Tue, 19 Mar 2013 20:22:08 +0000 (13:22 -0700)]
rename job steps to job tasks. refs #1416

12 years agorename pipeline to pipeline template. refs #1416
Tom Clegg [Tue, 19 Mar 2013 20:05:17 +0000 (13:05 -0700)]
rename pipeline to pipeline template. refs #1416

12 years agorename pipeline to pipeline template. refs #1416
Tom Clegg [Tue, 19 Mar 2013 19:53:08 +0000 (12:53 -0700)]
rename pipeline to pipeline template. refs #1416

12 years agorename pipeline invocation to pipeline instance. refs #1416
Tom Clegg [Tue, 19 Mar 2013 18:47:53 +0000 (11:47 -0700)]
rename pipeline invocation to pipeline instance. refs #1416

12 years agorename pipeline invocation to pipeline instance. refs #1416
Tom Clegg [Tue, 19 Mar 2013 18:18:15 +0000 (11:18 -0700)]
rename pipeline invocation to pipeline instance. refs #1416

12 years agorename job command to script. refs #1416
Tom Clegg [Tue, 19 Mar 2013 17:12:04 +0000 (10:12 -0700)]
rename job command to script. refs #1416

12 years agofix cache keys
Tom Clegg [Tue, 19 Mar 2013 19:19:37 +0000 (12:19 -0700)]
fix cache keys

12 years agorename job command to script. refs #1416
Tom Clegg [Tue, 19 Mar 2013 17:11:41 +0000 (10:11 -0700)]
rename job command to script. refs #1416

12 years agoInitial version of the cli client.
Ward Vandewege [Tue, 19 Mar 2013 16:19:34 +0000 (12:19 -0400)]
Initial version of the cli client.