rename explorer -> workbench
authorTom Clegg <tom@clinicalfuture.com>
Wed, 10 Apr 2013 21:45:21 +0000 (14:45 -0700)
committerTom Clegg <tom@clinicalfuture.com>
Wed, 10 Apr 2013 21:45:21 +0000 (14:45 -0700)
commita59152e34814f453a7380e68a55534e2f8922d57
treed367846b77a0eaa2b34ba9f2b909a0f06251a10b
parent43e1bc95a5bdde8818b3730804a75743e3a1eb87
rename explorer -> workbench
177 files changed:
apps/workbench/.gitignore [moved from apps/explorer/.gitignore with 100% similarity]
apps/workbench/Capfile [moved from apps/explorer/Capfile with 100% similarity]
apps/workbench/Capfile.ant [moved from apps/explorer/Capfile.ant with 100% similarity]
apps/workbench/Gemfile [moved from apps/explorer/Gemfile with 100% similarity]
apps/workbench/Gemfile.lock [moved from apps/explorer/Gemfile.lock with 100% similarity]
apps/workbench/README.rdoc [moved from apps/explorer/README.rdoc with 100% similarity]
apps/workbench/Rakefile [moved from apps/explorer/Rakefile with 100% similarity]
apps/workbench/app/assets/images/rails.png [moved from apps/explorer/app/assets/images/rails.png with 100% similarity]
apps/workbench/app/assets/javascripts/application.js [moved from apps/explorer/app/assets/javascripts/application.js with 100% similarity]
apps/workbench/app/assets/javascripts/collections.js.coffee [moved from apps/explorer/app/assets/javascripts/collections.js.coffee with 100% similarity]
apps/workbench/app/assets/javascripts/groups.js.coffee [moved from apps/explorer/app/assets/javascripts/groups.js.coffee with 100% similarity]
apps/workbench/app/assets/javascripts/job_tasks.js.coffee [moved from apps/explorer/app/assets/javascripts/job_tasks.js.coffee with 100% similarity]
apps/workbench/app/assets/javascripts/jobs.js.coffee [moved from apps/explorer/app/assets/javascripts/jobs.js.coffee with 100% similarity]
apps/workbench/app/assets/javascripts/links.js.coffee [moved from apps/explorer/app/assets/javascripts/links.js.coffee with 100% similarity]
apps/workbench/app/assets/javascripts/logs.js.coffee [moved from apps/explorer/app/assets/javascripts/logs.js.coffee with 100% similarity]
apps/workbench/app/assets/javascripts/pipeline_instances.js.coffee [moved from apps/explorer/app/assets/javascripts/pipeline_instances.js.coffee with 100% similarity]
apps/workbench/app/assets/javascripts/pipeline_templates.js.coffee [moved from apps/explorer/app/assets/javascripts/pipeline_templates.js.coffee with 100% similarity]
apps/workbench/app/assets/javascripts/sessions.js.coffee [moved from apps/explorer/app/assets/javascripts/sessions.js.coffee with 100% similarity]
apps/workbench/app/assets/javascripts/specimens.js.coffee [moved from apps/explorer/app/assets/javascripts/specimens.js.coffee with 100% similarity]
apps/workbench/app/assets/javascripts/users.js.coffee [moved from apps/explorer/app/assets/javascripts/users.js.coffee with 100% similarity]
apps/workbench/app/assets/stylesheets/application.css [moved from apps/explorer/app/assets/stylesheets/application.css with 100% similarity]
apps/workbench/app/assets/stylesheets/collections.css.scss [moved from apps/explorer/app/assets/stylesheets/collections.css.scss with 100% similarity]
apps/workbench/app/assets/stylesheets/groups.css.scss [moved from apps/explorer/app/assets/stylesheets/groups.css.scss with 100% similarity]
apps/workbench/app/assets/stylesheets/job_tasks.css.scss [moved from apps/explorer/app/assets/stylesheets/job_tasks.css.scss with 100% similarity]
apps/workbench/app/assets/stylesheets/jobs.css.scss [moved from apps/explorer/app/assets/stylesheets/jobs.css.scss with 100% similarity]
apps/workbench/app/assets/stylesheets/links.css.scss [moved from apps/explorer/app/assets/stylesheets/links.css.scss with 100% similarity]
apps/workbench/app/assets/stylesheets/logs.css.scss [moved from apps/explorer/app/assets/stylesheets/logs.css.scss with 100% similarity]
apps/workbench/app/assets/stylesheets/pipeline_instances.css.scss [moved from apps/explorer/app/assets/stylesheets/pipeline_instances.css.scss with 100% similarity]
apps/workbench/app/assets/stylesheets/pipeline_templates.css.scss [moved from apps/explorer/app/assets/stylesheets/pipeline_templates.css.scss with 100% similarity]
apps/workbench/app/assets/stylesheets/sessions.css.scss [moved from apps/explorer/app/assets/stylesheets/sessions.css.scss with 100% similarity]
apps/workbench/app/assets/stylesheets/specimens.css.scss [moved from apps/explorer/app/assets/stylesheets/specimens.css.scss with 100% similarity]
apps/workbench/app/assets/stylesheets/users.css.scss [moved from apps/explorer/app/assets/stylesheets/users.css.scss with 100% similarity]
apps/workbench/app/controllers/application_controller.rb [moved from apps/explorer/app/controllers/application_controller.rb with 100% similarity]
apps/workbench/app/controllers/collections_controller.rb [moved from apps/explorer/app/controllers/collections_controller.rb with 100% similarity]
apps/workbench/app/controllers/groups_controller.rb [moved from apps/explorer/app/controllers/groups_controller.rb with 100% similarity]
apps/workbench/app/controllers/job_tasks_controller.rb [moved from apps/explorer/app/controllers/job_tasks_controller.rb with 100% similarity]
apps/workbench/app/controllers/jobs_controller.rb [moved from apps/explorer/app/controllers/jobs_controller.rb with 100% similarity]
apps/workbench/app/controllers/links_controller.rb [moved from apps/explorer/app/controllers/links_controller.rb with 100% similarity]
apps/workbench/app/controllers/logs_controller.rb [moved from apps/explorer/app/controllers/logs_controller.rb with 100% similarity]
apps/workbench/app/controllers/pipeline_instances_controller.rb [moved from apps/explorer/app/controllers/pipeline_instances_controller.rb with 100% similarity]
apps/workbench/app/controllers/pipeline_templates_controller.rb [moved from apps/explorer/app/controllers/pipeline_templates_controller.rb with 100% similarity]
apps/workbench/app/controllers/sessions_controller.rb [moved from apps/explorer/app/controllers/sessions_controller.rb with 100% similarity]
apps/workbench/app/controllers/specimens_controller.rb [moved from apps/explorer/app/controllers/specimens_controller.rb with 100% similarity]
apps/workbench/app/controllers/users_controller.rb [moved from apps/explorer/app/controllers/users_controller.rb with 100% similarity]
apps/workbench/app/helpers/application_helper.rb [moved from apps/explorer/app/helpers/application_helper.rb with 100% similarity]
apps/workbench/app/helpers/collections_helper.rb [moved from apps/explorer/app/helpers/collections_helper.rb with 100% similarity]
apps/workbench/app/helpers/groups_helper.rb [moved from apps/explorer/app/helpers/groups_helper.rb with 100% similarity]
apps/workbench/app/helpers/job_tasks_helper.rb [moved from apps/explorer/app/helpers/job_tasks_helper.rb with 100% similarity]
apps/workbench/app/helpers/jobs_helper.rb [moved from apps/explorer/app/helpers/jobs_helper.rb with 100% similarity]
apps/workbench/app/helpers/links_helper.rb [moved from apps/explorer/app/helpers/links_helper.rb with 100% similarity]
apps/workbench/app/helpers/logs_helper.rb [moved from apps/explorer/app/helpers/logs_helper.rb with 100% similarity]
apps/workbench/app/helpers/pipeline_instances_helper.rb [moved from apps/explorer/app/helpers/pipeline_instances_helper.rb with 100% similarity]
apps/workbench/app/helpers/pipeline_templates_helper.rb [moved from apps/explorer/app/helpers/pipeline_templates_helper.rb with 100% similarity]
apps/workbench/app/helpers/sessions_helper.rb [moved from apps/explorer/app/helpers/sessions_helper.rb with 100% similarity]
apps/workbench/app/helpers/specimens_helper.rb [moved from apps/explorer/app/helpers/specimens_helper.rb with 100% similarity]
apps/workbench/app/helpers/users_helper.rb [moved from apps/explorer/app/helpers/users_helper.rb with 100% similarity]
apps/workbench/app/helpers/vcf_pipeline_helper.rb [moved from apps/explorer/app/helpers/vcf_pipeline_helper.rb with 100% similarity]
apps/workbench/app/mailers/.gitkeep [moved from apps/explorer/app/mailers/.gitkeep with 100% similarity]
apps/workbench/app/models/.gitkeep [moved from apps/explorer/app/models/.gitkeep with 100% similarity]
apps/workbench/app/models/collection.rb [moved from apps/explorer/app/models/collection.rb with 100% similarity]
apps/workbench/app/models/group.rb [moved from apps/explorer/app/models/group.rb with 100% similarity]
apps/workbench/app/models/job.rb [moved from apps/explorer/app/models/job.rb with 100% similarity]
apps/workbench/app/models/job_task.rb [moved from apps/explorer/app/models/job_task.rb with 100% similarity]
apps/workbench/app/models/link.rb [moved from apps/explorer/app/models/link.rb with 100% similarity]
apps/workbench/app/models/log.rb [moved from apps/explorer/app/models/log.rb with 100% similarity]
apps/workbench/app/models/orvos_api_client.rb [moved from apps/explorer/app/models/orvos_api_client.rb with 100% similarity]
apps/workbench/app/models/orvos_base.rb [moved from apps/explorer/app/models/orvos_base.rb with 100% similarity]
apps/workbench/app/models/orvos_resource_list.rb [moved from apps/explorer/app/models/orvos_resource_list.rb with 100% similarity]
apps/workbench/app/models/pipeline_instance.rb [moved from apps/explorer/app/models/pipeline_instance.rb with 100% similarity]
apps/workbench/app/models/pipeline_template.rb [moved from apps/explorer/app/models/pipeline_template.rb with 100% similarity]
apps/workbench/app/models/specimen.rb [moved from apps/explorer/app/models/specimen.rb with 100% similarity]
apps/workbench/app/models/user.rb [moved from apps/explorer/app/models/user.rb with 100% similarity]
apps/workbench/app/views/application/_orvos_object.html.erb [moved from apps/explorer/app/views/application/_orvos_object.html.erb with 100% similarity]
apps/workbench/app/views/application/_orvos_object_attr.html.erb [moved from apps/explorer/app/views/application/_orvos_object_attr.html.erb with 100% similarity]
apps/workbench/app/views/application/error.html.erb [moved from apps/explorer/app/views/application/error.html.erb with 100% similarity]
apps/workbench/app/views/collections/_nav.html.erb [moved from apps/explorer/app/views/collections/_nav.html.erb with 100% similarity]
apps/workbench/app/views/collections/graph.html.erb [moved from apps/explorer/app/views/collections/graph.html.erb with 100% similarity]
apps/workbench/app/views/collections/index.html.erb [moved from apps/explorer/app/views/collections/index.html.erb with 100% similarity]
apps/workbench/app/views/collections/show.html.erb [moved from apps/explorer/app/views/collections/show.html.erb with 100% similarity]
apps/workbench/app/views/groups/index.html.erb [moved from apps/explorer/app/views/groups/index.html.erb with 100% similarity]
apps/workbench/app/views/groups/show.html.erb [moved from apps/explorer/app/views/groups/show.html.erb with 100% similarity]
apps/workbench/app/views/jobs/index.html.erb [moved from apps/explorer/app/views/jobs/index.html.erb with 100% similarity]
apps/workbench/app/views/jobs/show.html.erb [moved from apps/explorer/app/views/jobs/show.html.erb with 100% similarity]
apps/workbench/app/views/layouts/application.html.erb [moved from apps/explorer/app/views/layouts/application.html.erb with 100% similarity]
apps/workbench/app/views/logs/show.html.erb [moved from apps/explorer/app/views/logs/show.html.erb with 100% similarity]
apps/workbench/app/views/pipeline_instances/index.html.erb [moved from apps/explorer/app/views/pipeline_instances/index.html.erb with 100% similarity]
apps/workbench/app/views/pipeline_instances/show.html.erb [moved from apps/explorer/app/views/pipeline_instances/show.html.erb with 100% similarity]
apps/workbench/app/views/pipeline_templates/index.html.erb [moved from apps/explorer/app/views/pipeline_templates/index.html.erb with 100% similarity]
apps/workbench/app/views/pipeline_templates/show.html.erb [moved from apps/explorer/app/views/pipeline_templates/show.html.erb with 100% similarity]
apps/workbench/app/views/sessions/index.html.erb [moved from apps/explorer/app/views/sessions/index.html.erb with 100% similarity]
apps/workbench/app/views/specimens/show.html.erb [moved from apps/explorer/app/views/specimens/show.html.erb with 100% similarity]
apps/workbench/app/views/users/show.html.erb [moved from apps/explorer/app/views/users/show.html.erb with 100% similarity]
apps/workbench/config.ru [moved from apps/explorer/config.ru with 100% similarity]
apps/workbench/config/application.rb [moved from apps/explorer/config/application.rb with 100% similarity]
apps/workbench/config/boot.rb [moved from apps/explorer/config/boot.rb with 100% similarity]
apps/workbench/config/database.yml [moved from apps/explorer/config/database.yml with 100% similarity]
apps/workbench/config/deploy.ant.rb [moved from apps/explorer/config/deploy.ant.rb with 100% similarity]
apps/workbench/config/deploy.common.rb [moved from apps/explorer/config/deploy.common.rb with 100% similarity]
apps/workbench/config/deploy.rb [moved from apps/explorer/config/deploy.rb with 100% similarity]
apps/workbench/config/environment.rb [moved from apps/explorer/config/environment.rb with 100% similarity]
apps/workbench/config/environments/development.rb.example [moved from apps/explorer/config/environments/development.rb.example with 100% similarity]
apps/workbench/config/environments/production.rb [moved from apps/explorer/config/environments/production.rb with 100% similarity]
apps/workbench/config/environments/test.rb [moved from apps/explorer/config/environments/test.rb with 100% similarity]
apps/workbench/config/initializers/backtrace_silencers.rb [moved from apps/explorer/config/initializers/backtrace_silencers.rb with 100% similarity]
apps/workbench/config/initializers/inflections.rb [moved from apps/explorer/config/initializers/inflections.rb with 100% similarity]
apps/workbench/config/initializers/mime_types.rb [moved from apps/explorer/config/initializers/mime_types.rb with 100% similarity]
apps/workbench/config/initializers/orvos_api_client.rb [moved from apps/explorer/config/initializers/orvos_api_client.rb with 100% similarity]
apps/workbench/config/initializers/secret_token.rb [moved from apps/explorer/config/initializers/secret_token.rb with 100% similarity]
apps/workbench/config/initializers/session_store.rb [moved from apps/explorer/config/initializers/session_store.rb with 100% similarity]
apps/workbench/config/initializers/wrap_parameters.rb [moved from apps/explorer/config/initializers/wrap_parameters.rb with 100% similarity]
apps/workbench/config/locales/en.yml [moved from apps/explorer/config/locales/en.yml with 100% similarity]
apps/workbench/config/routes.rb [moved from apps/explorer/config/routes.rb with 100% similarity]
apps/workbench/db/schema.rb [moved from apps/explorer/db/schema.rb with 100% similarity]
apps/workbench/db/seeds.rb [moved from apps/explorer/db/seeds.rb with 100% similarity]
apps/workbench/doc/README_FOR_APP [moved from apps/explorer/doc/README_FOR_APP with 100% similarity]
apps/workbench/lib/assets/.gitkeep [moved from apps/explorer/lib/assets/.gitkeep with 100% similarity]
apps/workbench/lib/tasks/.gitkeep [moved from apps/explorer/lib/tasks/.gitkeep with 100% similarity]
apps/workbench/log/.gitkeep [moved from apps/explorer/log/.gitkeep with 100% similarity]
apps/workbench/public/404.html [moved from apps/explorer/public/404.html with 100% similarity]
apps/workbench/public/422.html [moved from apps/explorer/public/422.html with 100% similarity]
apps/workbench/public/500.html [moved from apps/explorer/public/500.html with 100% similarity]
apps/workbench/public/d3.v3.min.js [moved from apps/explorer/public/d3.v3.min.js with 100% similarity]
apps/workbench/public/favicon.ico [moved from apps/explorer/public/favicon.ico with 100% similarity]
apps/workbench/public/graph-example.html [moved from apps/explorer/public/graph-example.html with 100% similarity]
apps/workbench/public/robots.txt [moved from apps/explorer/public/robots.txt with 100% similarity]
apps/workbench/script/rails [moved from apps/explorer/script/rails with 100% similarity]
apps/workbench/test/fixtures/.gitkeep [moved from apps/explorer/test/fixtures/.gitkeep with 100% similarity]
apps/workbench/test/fixtures/collections.yml [moved from apps/explorer/test/fixtures/collections.yml with 100% similarity]
apps/workbench/test/fixtures/groups.yml [moved from apps/explorer/test/fixtures/groups.yml with 100% similarity]
apps/workbench/test/fixtures/job_tasks.yml [moved from apps/explorer/test/fixtures/job_tasks.yml with 100% similarity]
apps/workbench/test/fixtures/jobs.yml [moved from apps/explorer/test/fixtures/jobs.yml with 100% similarity]
apps/workbench/test/fixtures/links.yml [moved from apps/explorer/test/fixtures/links.yml with 100% similarity]
apps/workbench/test/fixtures/logs.yml [moved from apps/explorer/test/fixtures/logs.yml with 100% similarity]
apps/workbench/test/fixtures/pipeline_instances.yml [moved from apps/explorer/test/fixtures/pipeline_instances.yml with 100% similarity]
apps/workbench/test/fixtures/pipeline_templates.yml [moved from apps/explorer/test/fixtures/pipeline_templates.yml with 100% similarity]
apps/workbench/test/fixtures/specimens.yml [moved from apps/explorer/test/fixtures/specimens.yml with 100% similarity]
apps/workbench/test/fixtures/users.yml [moved from apps/explorer/test/fixtures/users.yml with 100% similarity]
apps/workbench/test/functional/.gitkeep [moved from apps/explorer/test/functional/.gitkeep with 100% similarity]
apps/workbench/test/functional/collections_controller_test.rb [moved from apps/explorer/test/functional/collections_controller_test.rb with 100% similarity]
apps/workbench/test/functional/groups_controller_test.rb [moved from apps/explorer/test/functional/groups_controller_test.rb with 100% similarity]
apps/workbench/test/functional/job_tasks_controller_test.rb [moved from apps/explorer/test/functional/job_tasks_controller_test.rb with 100% similarity]
apps/workbench/test/functional/jobs_controller_test.rb [moved from apps/explorer/test/functional/jobs_controller_test.rb with 100% similarity]
apps/workbench/test/functional/links_controller_test.rb [moved from apps/explorer/test/functional/links_controller_test.rb with 100% similarity]
apps/workbench/test/functional/logs_controller_test.rb [moved from apps/explorer/test/functional/logs_controller_test.rb with 100% similarity]
apps/workbench/test/functional/pipeline_instances_controller_test.rb [moved from apps/explorer/test/functional/pipeline_instances_controller_test.rb with 100% similarity]
apps/workbench/test/functional/pipeline_templates_controller_test.rb [moved from apps/explorer/test/functional/pipeline_templates_controller_test.rb with 100% similarity]
apps/workbench/test/functional/sessions_controller_test.rb [moved from apps/explorer/test/functional/sessions_controller_test.rb with 100% similarity]
apps/workbench/test/functional/specimens_controller_test.rb [moved from apps/explorer/test/functional/specimens_controller_test.rb with 100% similarity]
apps/workbench/test/functional/users_controller_test.rb [moved from apps/explorer/test/functional/users_controller_test.rb with 100% similarity]
apps/workbench/test/integration/.gitkeep [moved from apps/explorer/test/integration/.gitkeep with 100% similarity]
apps/workbench/test/performance/browsing_test.rb [moved from apps/explorer/test/performance/browsing_test.rb with 100% similarity]
apps/workbench/test/test_helper.rb [moved from apps/explorer/test/test_helper.rb with 100% similarity]
apps/workbench/test/unit/.gitkeep [moved from apps/explorer/test/unit/.gitkeep with 100% similarity]
apps/workbench/test/unit/collection_test.rb [moved from apps/explorer/test/unit/collection_test.rb with 100% similarity]
apps/workbench/test/unit/group_test.rb [moved from apps/explorer/test/unit/group_test.rb with 100% similarity]
apps/workbench/test/unit/helpers/collections_helper_test.rb [moved from apps/explorer/test/unit/helpers/collections_helper_test.rb with 100% similarity]
apps/workbench/test/unit/helpers/groups_helper_test.rb [moved from apps/explorer/test/unit/helpers/groups_helper_test.rb with 100% similarity]
apps/workbench/test/unit/helpers/job_tasks_helper_test.rb [moved from apps/explorer/test/unit/helpers/job_tasks_helper_test.rb with 100% similarity]
apps/workbench/test/unit/helpers/jobs_helper_test.rb [moved from apps/explorer/test/unit/helpers/jobs_helper_test.rb with 100% similarity]
apps/workbench/test/unit/helpers/links_helper_test.rb [moved from apps/explorer/test/unit/helpers/links_helper_test.rb with 100% similarity]
apps/workbench/test/unit/helpers/logs_helper_test.rb [moved from apps/explorer/test/unit/helpers/logs_helper_test.rb with 100% similarity]
apps/workbench/test/unit/helpers/pipeline_instances_helper_test.rb [moved from apps/explorer/test/unit/helpers/pipeline_instances_helper_test.rb with 100% similarity]
apps/workbench/test/unit/helpers/pipeline_templates_helper_test.rb [moved from apps/explorer/test/unit/helpers/pipeline_templates_helper_test.rb with 100% similarity]
apps/workbench/test/unit/helpers/sessions_helper_test.rb [moved from apps/explorer/test/unit/helpers/sessions_helper_test.rb with 100% similarity]
apps/workbench/test/unit/helpers/specimens_helper_test.rb [moved from apps/explorer/test/unit/helpers/specimens_helper_test.rb with 100% similarity]
apps/workbench/test/unit/helpers/users_helper_test.rb [moved from apps/explorer/test/unit/helpers/users_helper_test.rb with 100% similarity]
apps/workbench/test/unit/job_task_test.rb [moved from apps/explorer/test/unit/job_task_test.rb with 100% similarity]
apps/workbench/test/unit/job_test.rb [moved from apps/explorer/test/unit/job_test.rb with 100% similarity]
apps/workbench/test/unit/link_test.rb [moved from apps/explorer/test/unit/link_test.rb with 100% similarity]
apps/workbench/test/unit/log_test.rb [moved from apps/explorer/test/unit/log_test.rb with 100% similarity]
apps/workbench/test/unit/pipeline_instance_test.rb [moved from apps/explorer/test/unit/pipeline_instance_test.rb with 100% similarity]
apps/workbench/test/unit/pipeline_template_test.rb [moved from apps/explorer/test/unit/pipeline_template_test.rb with 100% similarity]
apps/workbench/test/unit/specimen_test.rb [moved from apps/explorer/test/unit/specimen_test.rb with 100% similarity]
apps/workbench/test/unit/user_test.rb [moved from apps/explorer/test/unit/user_test.rb with 100% similarity]
apps/workbench/vendor/assets/javascripts/.gitkeep [moved from apps/explorer/vendor/assets/javascripts/.gitkeep with 100% similarity]
apps/workbench/vendor/assets/stylesheets/.gitkeep [moved from apps/explorer/vendor/assets/stylesheets/.gitkeep with 100% similarity]
apps/workbench/vendor/plugins/.gitkeep [moved from apps/explorer/vendor/plugins/.gitkeep with 100% similarity]