Eric Biagiotti [Fri, 15 Feb 2019 16:28:09 +0000 (11:28 -0500)]
14853: Adds os.name check for subprocess conditional import
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <eric.biagiotti@gmail.com>
chapmanb [Thu, 14 Feb 2019 16:23:39 +0000 (11:23 -0500)]
Python 3: only import subprocess32 on py27
Avoids the need to install and import subprocess32 when working
with any recent Python 3.x version. This helps with bioconda
install since subprocess32 is not built for py3.
Arvados-DCO-1.1-Signed-off-by: Brad Chapman <chapmanb@fastmail.com>
Tom Clegg [Wed, 13 Feb 2019 06:34:43 +0000 (01:34 -0500)]
14807: When ProviderType is unspecified, default to Arvados type.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 13 Feb 2019 06:32:34 +0000 (01:32 -0500)]
14807: Pass env vars on stdin instead of using SSH feature.
Arbitrary environment variables are typically not accepted by SSH
server configs.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 13 Feb 2019 03:00:21 +0000 (22:00 -0500)]
14807: Match systemd description to component name.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 12 Feb 2019 19:17:10 +0000 (14:17 -0500)]
14325: Start up immediately if there are no stale locks.
...instead of waiting for the pool to send a notification to trigger
the first loop iteration.
refs #14325
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Thu, 14 Feb 2019 23:28:00 +0000 (18:28 -0500)]
11561: Add lock_count to containers, cancel container on unlock exceeded
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Thu, 14 Feb 2019 19:56:47 +0000 (14:56 -0500)]
Merge branch '14745-azure-cloud-driver-fixups'
refs #14745
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <eric.biagiotti@gmail.com>
Eric Biagiotti [Thu, 14 Feb 2019 19:11:34 +0000 (14:11 -0500)]
14745: Removes unnecessary test parameter
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <eric.biagiotti@gmail.com>
Eric Biagiotti [Thu, 14 Feb 2019 17:31:53 +0000 (12:31 -0500)]
14745: Adds support for passing nil params to StubDriver InstanceSet
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <eric.biagiotti@gmail.com>
Tom Clegg [Thu, 14 Feb 2019 16:31:32 +0000 (11:31 -0500)]
Merge branch '14828-fix-flaky-test'
fixes #14828
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 14 Feb 2019 07:07:21 +0000 (02:07 -0500)]
14845: Fix inconsistent timeout error message.
http.Client's Timeout feature is not needed because every outgoing
request runs in the context of an incoming request, which already has
a deadline. It only makes the "timed out" error response inconsistent.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Eric Biagiotti [Wed, 13 Feb 2019 22:38:54 +0000 (17:38 -0500)]
14745: Improves azure driver exported var comment
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <eric.biagiotti@gmail.com>
Eric Biagiotti [Wed, 13 Feb 2019 22:18:57 +0000 (17:18 -0500)]
14745: Removes unneeded file and debug code and improves Duration comments
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <eric.biagiotti@gmail.com>
Eric Biagiotti [Wed, 13 Feb 2019 21:50:03 +0000 (16:50 -0500)]
14745: Adds back param loading to StubDriver InstanceSet
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <eric.biagiotti@gmail.com>
Tom Clegg [Wed, 13 Feb 2019 21:47:36 +0000 (16:47 -0500)]
14828: Fix double-cancel of unsatisfiable container.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Eric Biagiotti [Wed, 13 Feb 2019 20:10:48 +0000 (15:10 -0500)]
14745: Replaces debug println with proper return and doc clean up
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <eric.biagiotti@gmail.com>
Tom Morris [Wed, 30 Jan 2019 16:10:11 +0000 (11:10 -0500)]
Don't add trailing slash
Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris@veritasgenetics.com>
Eric Biagiotti [Wed, 13 Feb 2019 18:51:18 +0000 (13:51 -0500)]
14745: Updates StubDriver to match driver interface and updates vendor.json
StubDriver InstanceSet was previously using mapstructure to decode DriverParameters into a StubInstanceSet, which doesn't make sense, but mapstructure would just return nil instead of an error.
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <eric.biagiotti@gmail.com>
Eric Biagiotti [Tue, 12 Feb 2019 22:09:47 +0000 (17:09 -0500)]
14745: Updates drivers to use json.RawMessage instead of map[string]interface
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <eric.biagiotti@gmail.com
Tom Clegg [Tue, 12 Feb 2019 19:17:10 +0000 (14:17 -0500)]
14325: Start up immediately if there are no stale locks.
...instead of waiting for the pool to send a notification to trigger
the first loop iteration.
refs #14325
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 12 Feb 2019 16:25:56 +0000 (11:25 -0500)]
14325: Fix PrivateKey config type.
JSON decoder expects []byte fields to be base64-encoded, which we
don't want here.
refs #14325
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 12 Feb 2019 06:10:55 +0000 (01:10 -0500)]
Merge branch '14325-dispatch-cloud'
refs #14325
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 12 Feb 2019 06:07:09 +0000 (01:07 -0500)]
14325: Rename crunch-dispatch-cloud → arvados-dispatch-cloud.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Eric Biagiotti [Mon, 11 Feb 2019 21:46:29 +0000 (16:46 -0500)]
14745: Un-exports identifiers
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <eric.biagiotti@gmail.com>
Ward Vandewege [Mon, 11 Feb 2019 21:10:47 +0000 (16:10 -0500)]
Make sure to bump the dependency on the arvados gems to the 1.3 series.
refs #14559
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Eric Biagiotti [Mon, 11 Feb 2019 19:59:15 +0000 (14:59 -0500)]
14745: Makes DeleteDanglingResourcesAfter an arvados.Duration
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <eric.biagiotti@gmail.com>
Peter Amstutz [Mon, 11 Feb 2019 19:54:53 +0000 (14:54 -0500)]
Merge branch '14826-cert-path' refs #14826
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 11 Feb 2019 18:05:34 +0000 (13:05 -0500)]
14826: Fix copy and paste error
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 11 Feb 2019 16:32:01 +0000 (11:32 -0500)]
Merge branch '14725-wes' refs #14725
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 11 Feb 2019 16:23:48 +0000 (11:23 -0500)]
14725: Fix tests.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Mon, 11 Feb 2019 16:07:28 +0000 (11:07 -0500)]
14745: Updates config keys, documentation, and addresses golint suggestions
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <eric.biagiotti@gmail.com>
Peter Amstutz [Mon, 11 Feb 2019 15:57:45 +0000 (10:57 -0500)]
14826: API server looks in CA cert path that works on CentOS
API server makes callbacks to remote clusters to validate remote
users, ensure it has the right system CA cert path to validate TLS
certs of remote clusters.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 11 Feb 2019 15:09:24 +0000 (10:09 -0500)]
14725: Don't give a cluster_id when updating container request record
* When transferring files from http to keep, explicitly open in binary
mode
* Bump arvados-python-client dependency for python3 support
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Mon, 11 Feb 2019 14:58:11 +0000 (09:58 -0500)]
14745: Adds gocheck hook to go test for azure dirver
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <eric.biagiotti@gmail.com>
Eric Biagiotti [Mon, 11 Feb 2019 14:13:11 +0000 (09:13 -0500)]
14745: Makes the azure driver its own package
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <eric.biagiotti@gmail.com>
Ward Vandewege [Thu, 7 Feb 2019 16:52:04 +0000 (11:52 -0500)]
In the arvados/jobs image, use the Python executable from the
python-arvados-python-client package by default.
refs #9945
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Eric Biagiotti [Wed, 6 Feb 2019 22:38:17 +0000 (17:38 -0500)]
Merge branch '13306-arvados-cwl-runner-py3-support'
refs #13306
3
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <eric.biagiotti@gmail.com>
Tom Clegg [Wed, 6 Feb 2019 21:29:38 +0000 (16:29 -0500)]
Merge branch '14325-dispatch-cloud'
closes #14325
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 6 Feb 2019 21:27:57 +0000 (16:27 -0500)]
14325: Merge branch 'master'
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Eric Biagiotti [Wed, 6 Feb 2019 16:40:17 +0000 (11:40 -0500)]
Merge branch 'master' into 13306-arvados-cwl-runner-py3-support
refs #13306
3
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <eric.biagiotti@gmail.com>
Eric Biagiotti [Wed, 6 Feb 2019 16:40:04 +0000 (11:40 -0500)]
13306: Removing unneeded import statements
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <eric.biagiotti@gmail.com>
Ward Vandewege [Tue, 5 Feb 2019 22:14:05 +0000 (17:14 -0500)]
Make the python-arvados-cwl-runner package expose the cwltool executable, make
it conflict with the python-cwltool (and cwltool) packages, and add a note to
the upgrade documentation to that effect. Also document the Centos7 specific
upgrade from python33 to rh-python35 as part of story 9945.
refs #9945
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Eric Biagiotti [Tue, 5 Feb 2019 18:25:14 +0000 (13:25 -0500)]
Merge branch '13306-arvados-cwl-runner-py3-support'
refs #13306
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <eric.biagiotti@gmail.com>
Eric Biagiotti [Tue, 5 Feb 2019 17:55:54 +0000 (12:55 -0500)]
13306: Adds declaration of py2/3 support to arvados cwl and python sdks
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <eric.biagiotti@gmail.com>
Eric Biagiotti [Tue, 5 Feb 2019 16:53:07 +0000 (11:53 -0500)]
13306: fixes test_with_arvados.sh pip executable with python2
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <eric.biagiotti@gmail.com>
Tom Clegg [Tue, 5 Feb 2019 15:41:51 +0000 (10:41 -0500)]
Merge branch '14806-crunch1-unescape-manifest'
fixes #14806
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 5 Feb 2019 15:41:31 +0000 (10:41 -0500)]
14806: Merge branch 'master'
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Ward Vandewege [Tue, 5 Feb 2019 13:36:07 +0000 (08:36 -0500)]
We have reset the package iterations to -1, make the
run-build-docker-jobs-image.sh script reflect that.
refs #9945
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Mon, 4 Feb 2019 22:21:22 +0000 (17:21 -0500)]
Do not try to test packages that were not built.
refs #9945
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Tom Clegg [Mon, 4 Feb 2019 21:43:14 +0000 (16:43 -0500)]
14806: Fix test suite to work even if PERL5LIB is set.
PERL5LIB has precedence over PERLLIB.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 4 Feb 2019 18:17:44 +0000 (13:17 -0500)]
arvbox support for python3 refs #13306
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 4 Feb 2019 20:58:57 +0000 (15:58 -0500)]
14806: Handle escaped chars when parsing docker image manifest.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 4 Feb 2019 20:13:34 +0000 (15:13 -0500)]
13306: fix crunchv1 bug
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 4 Feb 2019 20:13:12 +0000 (15:13 -0500)]
13306: test_with_arvbox can select api
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 4 Feb 2019 19:22:58 +0000 (14:22 -0500)]
13306: select between "conformance" and "integration" in test_with_arvbox.sh
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 4 Feb 2019 18:27:09 +0000 (13:27 -0500)]
13306: test_with_arvbox.sh can test either python2 or python3
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Ward Vandewege [Mon, 4 Feb 2019 17:41:29 +0000 (12:41 -0500)]
The libpam-arvados package on Centos7 has a dependency on the python-pam package.
refs #9945
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Tom Clegg [Mon, 4 Feb 2019 16:21:32 +0000 (11:21 -0500)]
14325: Log stderr from last boot-probe when giving up on boot.
Remove duplicate log message after failed run-probe.
Ensure we always make at least one probe attempt after the boot/probe
timeout expires.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Ward Vandewege [Mon, 4 Feb 2019 15:35:51 +0000 (10:35 -0500)]
Merge branch '9945-make-python-package-dependency-free'
closes #9945
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Mon, 4 Feb 2019 15:19:35 +0000 (10:19 -0500)]
9945: Merge branch 'master' into 9945-make-python-package-dependency-free
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Mon, 4 Feb 2019 13:36:00 +0000 (08:36 -0500)]
9945: Backwards compatibility fix for libpam-arvados
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Peter Amstutz [Fri, 1 Feb 2019 22:03:52 +0000 (17:03 -0500)]
arvbox certificates can have DNS in subjectAltName
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Fri, 1 Feb 2019 21:29:17 +0000 (16:29 -0500)]
14325: Merge branch 'master'
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 1 Feb 2019 21:26:46 +0000 (16:26 -0500)]
14325: Rephrase confusing conditions and add comments.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 1 Feb 2019 21:25:59 +0000 (16:25 -0500)]
14325: Improve identifiers/comments.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 1 Feb 2019 21:23:07 +0000 (16:23 -0500)]
14325: Note assumption concurrent dispatchers share a VM size menu.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 1 Feb 2019 21:22:41 +0000 (16:22 -0500)]
14325: Fix test.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Eric Biagiotti [Fri, 1 Feb 2019 18:45:25 +0000 (13:45 -0500)]
13306: Improved py2/3 str compatibility
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <eric.biagiotti@gmail.com>
Eric Biagiotti [Fri, 1 Feb 2019 18:33:14 +0000 (13:33 -0500)]
13306: Additional dict item iteration improvements
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <eric.biagiotti@gmail.com>
Ward Vandewege [Fri, 1 Feb 2019 15:39:16 +0000 (10:39 -0500)]
9945: Merge branch 'master' into 9945-make-python-package-dependency-free
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Peter Amstutz [Thu, 31 Jan 2019 17:54:10 +0000 (12:54 -0500)]
13306: Fix 12213-keepref test
Test itself was buggy and seems to have been relying on undefined
behavior, py3 exposed the bug.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Thu, 31 Jan 2019 17:16:42 +0000 (12:16 -0500)]
13306: Fixes futurize mistakes regarding PathMapper items()
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <eric.biagiotti@gmail.com>
Ward Vandewege [Wed, 30 Jan 2019 21:14:52 +0000 (16:14 -0500)]
9945: More changes based on review comments.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Lucas Di Pentima [Wed, 30 Jan 2019 20:53:42 +0000 (17:53 -0300)]
Merge branch '14770-wb-acr-bad-param'
Closes #14770
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Wed, 30 Jan 2019 20:18:30 +0000 (17:18 -0300)]
Merge branch '14738-tag-editor-fix-es5'
Closes #14738
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Ward Vandewege [Tue, 29 Jan 2019 21:53:43 +0000 (16:53 -0500)]
9945: address more review comments.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Lucas Di Pentima [Tue, 29 Jan 2019 22:48:15 +0000 (19:48 -0300)]
14738: Replaces double with single quotes for code style.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 29 Jan 2019 20:39:26 +0000 (17:39 -0300)]
14738: Enhances code readability when concatenating strings.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 29 Jan 2019 19:25:02 +0000 (16:25 -0300)]
14738: Fixes the double-slash usage on requests to prevent 301 from controller
When a request is made to controller using double slashes, for example to
http://apiserver//arvados/v1/collections, arvados controller returns a 301
that breaks CORS.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 29 Jan 2019 09:30:10 +0000 (06:30 -0300)]
Merge branch '14718-api-login-salted-token'
Closes #14718
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 28 Jan 2019 22:03:10 +0000 (19:03 -0300)]
14718: Updates controller test to support josh_id's return_to new format.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 28 Jan 2019 21:58:06 +0000 (18:58 -0300)]
14718: Validates remote cluster id parameter on login endpoint & callback.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Ward Vandewege [Wed, 23 Jan 2019 15:12:59 +0000 (10:12 -0500)]
9945: address a bunch of review comments.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Lucas Di Pentima [Mon, 28 Jan 2019 20:12:33 +0000 (17:12 -0300)]
14718: Changes the way remote param is packed into return_to.
Also:
* Escapes the remote param for security reasons.
* Adds comments.
* Updates tests.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Eric Biagiotti [Mon, 28 Jan 2019 15:34:10 +0000 (10:34 -0500)]
Merge branch 'master' into 13306-arvados-cwl-runner-py3-support
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Mon, 28 Jan 2019 15:14:30 +0000 (10:14 -0500)]
13306: Removing debug echo
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Tom Clegg [Mon, 28 Jan 2019 07:26:49 +0000 (02:26 -0500)]
14325: Clean up test suite logging.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 28 Jan 2019 07:19:27 +0000 (02:19 -0500)]
14325: Change remaining LameInstanceSet uses to StubDriver.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Sat, 26 Jan 2019 00:04:58 +0000 (21:04 -0300)]
14718: Issue salted token when passing 'remote' param to login.
When logging in with a 'remote' parameter, it's encoded into the return_to
param passed to the SSO server so that it's received back after the user
is authenticated.
When the omniauth callback receives a remote parameter inside the return_to
url, it returns the salted version of the client token.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Fri, 25 Jan 2019 21:40:59 +0000 (16:40 -0500)]
14325: Don't count busy workers with state=Unknown as Unallocated.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 25 Jan 2019 21:31:48 +0000 (16:31 -0500)]
14325: Build crunch-dispatch-cloud package.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 25 Jan 2019 21:28:31 +0000 (16:28 -0500)]
14325: Point to API details in interface doc comments.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 25 Jan 2019 20:24:19 +0000 (15:24 -0500)]
14325: Test resuming worker pool state after restart.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 25 Jan 2019 18:28:15 +0000 (13:28 -0500)]
14325: Remove obsolete test stubs.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 25 Jan 2019 18:22:25 +0000 (13:22 -0500)]
14325: Clean up unsafe concurrency in tests.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 25 Jan 2019 18:20:34 +0000 (13:20 -0500)]
14325: Document Running() return value.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Eric Biagiotti [Fri, 25 Jan 2019 18:03:12 +0000 (13:03 -0500)]
13306: Adding support for building the dev docker jobs image with py3
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Tom Clegg [Thu, 24 Jan 2019 21:10:48 +0000 (16:10 -0500)]
14325: Don't shutdown busy VMs even if boot probe fails.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 22 Jan 2019 22:30:52 +0000 (17:30 -0500)]
14325: Wake up scheduler when quota timeout expires.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
projects / arvados.git / log