Peter Amstutz [Mon, 11 Feb 2019 19:54:53 +0000 (14:54 -0500)]
Merge branch '14826-cert-path' refs #14826
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 11 Feb 2019 18:05:34 +0000 (13:05 -0500)]
14826: Fix copy and paste error
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 11 Feb 2019 16:32:01 +0000 (11:32 -0500)]
Merge branch '14725-wes' refs #14725
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 11 Feb 2019 16:23:48 +0000 (11:23 -0500)]
14725: Fix tests.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 11 Feb 2019 15:57:45 +0000 (10:57 -0500)]
14826: API server looks in CA cert path that works on CentOS
API server makes callbacks to remote clusters to validate remote
users, ensure it has the right system CA cert path to validate TLS
certs of remote clusters.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 11 Feb 2019 15:09:24 +0000 (10:09 -0500)]
14725: Don't give a cluster_id when updating container request record
* When transferring files from http to keep, explicitly open in binary
mode
* Bump arvados-python-client dependency for python3 support
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Ward Vandewege [Thu, 7 Feb 2019 16:52:04 +0000 (11:52 -0500)]
In the arvados/jobs image, use the Python executable from the
python-arvados-python-client package by default.
refs #9945
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Eric Biagiotti [Wed, 6 Feb 2019 22:38:17 +0000 (17:38 -0500)]
Merge branch '13306-arvados-cwl-runner-py3-support'
refs #13306
3
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <eric.biagiotti@gmail.com>
Tom Clegg [Wed, 6 Feb 2019 21:29:38 +0000 (16:29 -0500)]
Merge branch '14325-dispatch-cloud'
closes #14325
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 6 Feb 2019 21:27:57 +0000 (16:27 -0500)]
14325: Merge branch 'master'
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Eric Biagiotti [Wed, 6 Feb 2019 16:40:17 +0000 (11:40 -0500)]
Merge branch 'master' into 13306-arvados-cwl-runner-py3-support
refs #13306
3
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <eric.biagiotti@gmail.com>
Eric Biagiotti [Wed, 6 Feb 2019 16:40:04 +0000 (11:40 -0500)]
13306: Removing unneeded import statements
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <eric.biagiotti@gmail.com>
Ward Vandewege [Tue, 5 Feb 2019 22:14:05 +0000 (17:14 -0500)]
Make the python-arvados-cwl-runner package expose the cwltool executable, make
it conflict with the python-cwltool (and cwltool) packages, and add a note to
the upgrade documentation to that effect. Also document the Centos7 specific
upgrade from python33 to rh-python35 as part of story 9945.
refs #9945
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Eric Biagiotti [Tue, 5 Feb 2019 18:25:14 +0000 (13:25 -0500)]
Merge branch '13306-arvados-cwl-runner-py3-support'
refs #13306
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <eric.biagiotti@gmail.com>
Eric Biagiotti [Tue, 5 Feb 2019 17:55:54 +0000 (12:55 -0500)]
13306: Adds declaration of py2/3 support to arvados cwl and python sdks
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <eric.biagiotti@gmail.com>
Eric Biagiotti [Tue, 5 Feb 2019 16:53:07 +0000 (11:53 -0500)]
13306: fixes test_with_arvados.sh pip executable with python2
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <eric.biagiotti@gmail.com>
Tom Clegg [Tue, 5 Feb 2019 15:41:51 +0000 (10:41 -0500)]
Merge branch '14806-crunch1-unescape-manifest'
fixes #14806
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 5 Feb 2019 15:41:31 +0000 (10:41 -0500)]
14806: Merge branch 'master'
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Ward Vandewege [Tue, 5 Feb 2019 13:36:07 +0000 (08:36 -0500)]
We have reset the package iterations to -1, make the
run-build-docker-jobs-image.sh script reflect that.
refs #9945
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Mon, 4 Feb 2019 22:21:22 +0000 (17:21 -0500)]
Do not try to test packages that were not built.
refs #9945
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Tom Clegg [Mon, 4 Feb 2019 21:43:14 +0000 (16:43 -0500)]
14806: Fix test suite to work even if PERL5LIB is set.
PERL5LIB has precedence over PERLLIB.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 4 Feb 2019 18:17:44 +0000 (13:17 -0500)]
arvbox support for python3 refs #13306
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 4 Feb 2019 20:58:57 +0000 (15:58 -0500)]
14806: Handle escaped chars when parsing docker image manifest.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 4 Feb 2019 20:13:34 +0000 (15:13 -0500)]
13306: fix crunchv1 bug
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 4 Feb 2019 20:13:12 +0000 (15:13 -0500)]
13306: test_with_arvbox can select api
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 4 Feb 2019 19:22:58 +0000 (14:22 -0500)]
13306: select between "conformance" and "integration" in test_with_arvbox.sh
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 4 Feb 2019 18:27:09 +0000 (13:27 -0500)]
13306: test_with_arvbox.sh can test either python2 or python3
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Ward Vandewege [Mon, 4 Feb 2019 17:41:29 +0000 (12:41 -0500)]
The libpam-arvados package on Centos7 has a dependency on the python-pam package.
refs #9945
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Tom Clegg [Mon, 4 Feb 2019 16:21:32 +0000 (11:21 -0500)]
14325: Log stderr from last boot-probe when giving up on boot.
Remove duplicate log message after failed run-probe.
Ensure we always make at least one probe attempt after the boot/probe
timeout expires.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Ward Vandewege [Mon, 4 Feb 2019 15:35:51 +0000 (10:35 -0500)]
Merge branch '9945-make-python-package-dependency-free'
closes #9945
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Mon, 4 Feb 2019 15:19:35 +0000 (10:19 -0500)]
9945: Merge branch 'master' into 9945-make-python-package-dependency-free
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Mon, 4 Feb 2019 13:36:00 +0000 (08:36 -0500)]
9945: Backwards compatibility fix for libpam-arvados
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Peter Amstutz [Fri, 1 Feb 2019 22:03:52 +0000 (17:03 -0500)]
arvbox certificates can have DNS in subjectAltName
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Fri, 1 Feb 2019 21:29:17 +0000 (16:29 -0500)]
14325: Merge branch 'master'
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 1 Feb 2019 21:26:46 +0000 (16:26 -0500)]
14325: Rephrase confusing conditions and add comments.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 1 Feb 2019 21:25:59 +0000 (16:25 -0500)]
14325: Improve identifiers/comments.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 1 Feb 2019 21:23:07 +0000 (16:23 -0500)]
14325: Note assumption concurrent dispatchers share a VM size menu.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 1 Feb 2019 21:22:41 +0000 (16:22 -0500)]
14325: Fix test.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Eric Biagiotti [Fri, 1 Feb 2019 18:45:25 +0000 (13:45 -0500)]
13306: Improved py2/3 str compatibility
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <eric.biagiotti@gmail.com>
Eric Biagiotti [Fri, 1 Feb 2019 18:33:14 +0000 (13:33 -0500)]
13306: Additional dict item iteration improvements
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <eric.biagiotti@gmail.com>
Ward Vandewege [Fri, 1 Feb 2019 15:39:16 +0000 (10:39 -0500)]
9945: Merge branch 'master' into 9945-make-python-package-dependency-free
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Peter Amstutz [Thu, 31 Jan 2019 17:54:10 +0000 (12:54 -0500)]
13306: Fix 12213-keepref test
Test itself was buggy and seems to have been relying on undefined
behavior, py3 exposed the bug.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Eric Biagiotti [Thu, 31 Jan 2019 17:16:42 +0000 (12:16 -0500)]
13306: Fixes futurize mistakes regarding PathMapper items()
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <eric.biagiotti@gmail.com>
Ward Vandewege [Wed, 30 Jan 2019 21:14:52 +0000 (16:14 -0500)]
9945: More changes based on review comments.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Lucas Di Pentima [Wed, 30 Jan 2019 20:53:42 +0000 (17:53 -0300)]
Merge branch '14770-wb-acr-bad-param'
Closes #14770
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Wed, 30 Jan 2019 20:18:30 +0000 (17:18 -0300)]
Merge branch '14738-tag-editor-fix-es5'
Closes #14738
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Ward Vandewege [Tue, 29 Jan 2019 21:53:43 +0000 (16:53 -0500)]
9945: address more review comments.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Lucas Di Pentima [Tue, 29 Jan 2019 22:48:15 +0000 (19:48 -0300)]
14738: Replaces double with single quotes for code style.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 29 Jan 2019 20:39:26 +0000 (17:39 -0300)]
14738: Enhances code readability when concatenating strings.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 29 Jan 2019 19:25:02 +0000 (16:25 -0300)]
14738: Fixes the double-slash usage on requests to prevent 301 from controller
When a request is made to controller using double slashes, for example to
http://apiserver//arvados/v1/collections, arvados controller returns a 301
that breaks CORS.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Tue, 29 Jan 2019 09:30:10 +0000 (06:30 -0300)]
Merge branch '14718-api-login-salted-token'
Closes #14718
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 28 Jan 2019 22:03:10 +0000 (19:03 -0300)]
14718: Updates controller test to support josh_id's return_to new format.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Mon, 28 Jan 2019 21:58:06 +0000 (18:58 -0300)]
14718: Validates remote cluster id parameter on login endpoint & callback.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Ward Vandewege [Wed, 23 Jan 2019 15:12:59 +0000 (10:12 -0500)]
9945: address a bunch of review comments.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Lucas Di Pentima [Mon, 28 Jan 2019 20:12:33 +0000 (17:12 -0300)]
14718: Changes the way remote param is packed into return_to.
Also:
* Escapes the remote param for security reasons.
* Adds comments.
* Updates tests.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Eric Biagiotti [Mon, 28 Jan 2019 15:34:10 +0000 (10:34 -0500)]
Merge branch 'master' into 13306-arvados-cwl-runner-py3-support
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Mon, 28 Jan 2019 15:14:30 +0000 (10:14 -0500)]
13306: Removing debug echo
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Tom Clegg [Mon, 28 Jan 2019 07:26:49 +0000 (02:26 -0500)]
14325: Clean up test suite logging.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 28 Jan 2019 07:19:27 +0000 (02:19 -0500)]
14325: Change remaining LameInstanceSet uses to StubDriver.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Sat, 26 Jan 2019 00:04:58 +0000 (21:04 -0300)]
14718: Issue salted token when passing 'remote' param to login.
When logging in with a 'remote' parameter, it's encoded into the return_to
param passed to the SSO server so that it's received back after the user
is authenticated.
When the omniauth callback receives a remote parameter inside the return_to
url, it returns the salted version of the client token.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Fri, 25 Jan 2019 21:40:59 +0000 (16:40 -0500)]
14325: Don't count busy workers with state=Unknown as Unallocated.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 25 Jan 2019 21:31:48 +0000 (16:31 -0500)]
14325: Build crunch-dispatch-cloud package.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 25 Jan 2019 21:28:31 +0000 (16:28 -0500)]
14325: Point to API details in interface doc comments.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 25 Jan 2019 20:24:19 +0000 (15:24 -0500)]
14325: Test resuming worker pool state after restart.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 25 Jan 2019 18:28:15 +0000 (13:28 -0500)]
14325: Remove obsolete test stubs.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 25 Jan 2019 18:22:25 +0000 (13:22 -0500)]
14325: Clean up unsafe concurrency in tests.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 25 Jan 2019 18:20:34 +0000 (13:20 -0500)]
14325: Document Running() return value.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Eric Biagiotti [Fri, 25 Jan 2019 18:03:12 +0000 (13:03 -0500)]
13306: Adding support for building the dev docker jobs image with py3
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Tom Clegg [Thu, 24 Jan 2019 21:10:48 +0000 (16:10 -0500)]
14325: Don't shutdown busy VMs even if boot probe fails.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 22 Jan 2019 22:30:52 +0000 (17:30 -0500)]
14325: Wake up scheduler when quota timeout expires.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 22 Jan 2019 22:13:56 +0000 (17:13 -0500)]
14325: Obey EarliestRetry specified by cloud rate-limiting errors.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Thu, 24 Jan 2019 18:48:54 +0000 (15:48 -0300)]
14770: Fixes parameter on acr call.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Eric Biagiotti [Thu, 24 Jan 2019 14:38:25 +0000 (09:38 -0500)]
13306: Unicode fix for docker image generation in py3 environment
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Thu, 24 Jan 2019 14:37:13 +0000 (09:37 -0500)]
13306: Unicode fixes for the conformance tests
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Lucas Di Pentima [Tue, 22 Jan 2019 16:40:02 +0000 (13:40 -0300)]
Merge branch '14482-rubysdk-empty-dir'
Closes #14482
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Ward Vandewege [Tue, 22 Jan 2019 01:46:50 +0000 (20:46 -0500)]
9945: use virtualenv for our python packages
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Thu, 20 Dec 2018 16:52:01 +0000 (11:52 -0500)]
9945: run-library changes
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Sun, 20 Jan 2019 18:12:45 +0000 (13:12 -0500)]
9945: there is a new rvm gpg key
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Tom Clegg [Mon, 21 Jan 2019 20:19:53 +0000 (15:19 -0500)]
14325: Move magic number to const.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 21 Jan 2019 15:19:17 +0000 (10:19 -0500)]
14325: Log when a worker's first probe succeeds.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 21 Jan 2019 15:09:09 +0000 (10:09 -0500)]
14325: Shutdown unknown-state worker after boot timeout.
(instead of idle timeout)
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 21 Jan 2019 14:38:58 +0000 (09:38 -0500)]
14325: Include instance ID in log messages from stub VM.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Fri, 18 Jan 2019 23:24:43 +0000 (20:24 -0300)]
14482: Stricter token regexes.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Fri, 18 Jan 2019 21:54:59 +0000 (16:54 -0500)]
14325: Use snake_case keys in management API responses.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 18 Jan 2019 21:28:45 +0000 (16:28 -0500)]
14325: Cancel containers with unsatisfiable runtime constraints.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Eric Biagiotti [Fri, 18 Jan 2019 16:08:13 +0000 (11:08 -0500)]
13306: Removing old_div to simplify division operations
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Lucas Di Pentima [Thu, 17 Jan 2019 23:53:58 +0000 (20:53 -0300)]
14482: Manifest validation including 8-bit escaped chars; with tests.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Thu, 17 Jan 2019 21:31:55 +0000 (16:31 -0500)]
14325: Test dispatch container queue against controller.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 17 Jan 2019 21:29:18 +0000 (16:29 -0500)]
14325: Fix dropped request params when body not specified by caller.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Eric Biagiotti [Thu, 17 Jan 2019 21:03:03 +0000 (16:03 -0500)]
13306: Removing list wrapping added by futurize to PathMapper objects
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Because cwltool.PathMapper objects have a function called items(), futurize incorrectly added the results of calls to items() to a list object (thinking it was a call to dict.items()). In fact, cwltool.PathMapper.items() already returns a list.
Eric Biagiotti [Thu, 17 Jan 2019 20:55:24 +0000 (15:55 -0500)]
13306: Updating dict items as lists to improve py2 performance
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Thu, 17 Jan 2019 20:40:08 +0000 (15:40 -0500)]
13306: Fixing previous commit to use viewvalues instead of listvalues
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Tom Clegg [Thu, 17 Jan 2019 20:08:04 +0000 (15:08 -0500)]
14325: Test that ssh_executor obeys a negative VerifyHostKey result.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 17 Jan 2019 19:35:29 +0000 (14:35 -0500)]
14325: Add total houly price metric.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Eric Biagiotti [Thu, 17 Jan 2019 19:00:05 +0000 (14:00 -0500)]
13306: Updating dict values as a list to improve py2 performance
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Thu, 17 Jan 2019 18:49:39 +0000 (13:49 -0500)]
13306: Updating dict keys as a list to ensure py2/3 compatibility
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Tom Clegg [Thu, 17 Jan 2019 17:01:15 +0000 (12:01 -0500)]
14325: Configurable SSH target port for cloud VMs.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Thu, 17 Jan 2019 16:43:25 +0000 (13:43 -0300)]
Merge branch '14539-pysdk-empty-dir'
Closes #14539
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Eric Biagiotti [Thu, 17 Jan 2019 16:21:04 +0000 (11:21 -0500)]
13306: Updating dict value iteration to be more efficient with py2
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
Eric Biagiotti [Thu, 17 Jan 2019 16:11:35 +0000 (11:11 -0500)]
13306: Adds test for when get_current_container results in a 404
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>
projects / arvados.git / log