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Merge branch 'master' into 4487-and-4558
[arvados.git]
/
crunch_scripts
/
arvados-bcbio-nextgen.py
2014-09-15
Tim Pierce
Merge branch 'master' into 3699-arv-copy
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2014-09-15
Tom Clegg
3550: Merge branch 'master' into 3550-local-pipeline
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2014-09-09
radhika
Merge branch 'master' into 3654-combine-selections
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2014-09-09
Peter Amstutz
Merge branch '3453-arv-list-docker-images' closes ...
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2014-09-09
Peter Amstutz
Merge branch 'master' into 3586-job-priority closes...
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2014-09-08
Peter Amstutz
Merge branch '3644-arv-mount-projects' closes #3644
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2014-09-08
Tim Pierce
3823: bug fixes for arvados-bcbio-nextgen.py
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2014-08-20
Phil Hodgson
Merge branch 'master' into 3354-render-textile
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2014-08-19
Peter Amstutz
Merge branch 'master' into 3036-collection-uuids
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2014-08-18
Tom Clegg
3114: Merge branch 'master' into 3114-copy-to-project
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2014-08-16
Tom Clegg
Merge branch '2800-python-global-state' into 2800-pgs
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2014-08-14
Tom Clegg
3551: Merge branch 'master' into 3551-go-layout
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2014-08-14
radhika
Merge branch 'master' into 3112-report-bug
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2014-08-14
Peter Amstutz
Merge branch '3505-virtual-work-dir' refs #3505
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2014-08-14
Peter Amstutz
Merge branch 'master' into 3505-virtual-work-dir
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2014-08-14
Peter Amstutz
3505: Move helper scripts into crunchutil module. ...
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2014-07-09
radhika
Merge branch 'master' into 3106-modal-loading-indicator
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2014-07-08
radhika
Merge branch 'master' into 2380-ssh-doc
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2014-07-08
Peter Amstutz
missing paren typo in arvados-bcbio-nextgen.py. refs...
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2014-07-08
Peter Amstutz
bc-bio script links gemini reference data. refs #2991
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2014-07-07
Peter Amstutz
add 'import sys' to arvados-bcbio-nextgen. no issue #
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2014-07-07
radhika
Merge branch 'master' into 3140-project-content-tabs
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2014-07-07
radhika
Merge branch 'master' into 2380-ssh-doc
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2014-07-07
radhika
Merge branch 'master' into 3106-modal-loading-indicator
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2014-07-07
Peter Amstutz
Default arvados-bcbio-nextgen pipeline to use freebayes...
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2014-07-07
radhika
Merge branch 'master' into 3106-modal-loading-indicator
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2014-07-07
Peter Amstutz
arvados-bcbio-nextgen writes output now. Put write_dir...
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2014-07-07
Peter Amstutz
Bugfix os.environ() -> os.environ[] no issue #
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2014-07-07
Peter Amstutz
Merge branch 'bcbio-nextgen' refs #2991
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2014-07-07
Peter Amstutz
Add -n cores to run bcbio in parallel on a multicore...
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2014-07-03
Peter Amstutz
fix bwa_index
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2014-07-02
Peter Amstutz
Backed that out, make a symlink to tool-data instead
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2014-07-02
Peter Amstutz
tool-data in work
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2014-07-02
Peter Amstutz
fix sub R1 R2
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2014-07-02
Peter Amstutz
refer template directly
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2014-07-02
Peter Amstutz
write template
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2014-07-02
Peter Amstutz
open for writing
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2014-07-02
Peter Amstutz
fix config copy
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2014-07-02
Peter Amstutz
fixed syntax error
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2014-07-02
Peter Amstutz
Fixed +x
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2014-07-02
Peter Amstutz
First try at bcbio-nextgen script
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