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fix config copy
authorPeter Amstutz <peter.amstutz@curoverse.com>
Wed, 2 Jul 2014 20:23:45 +0000 (16:23 -0400)
committerPeter Amstutz <peter.amstutz@curoverse.com>
Wed, 2 Jul 2014 20:23:45 +0000 (16:23 -0400)
crunch_scripts/arvados-bcbio-nextgen.py patch | blob | history

diff --git a/crunch_scripts/arvados-bcbio-nextgen.py b/crunch_scripts/arvados-bcbio-nextgen.py
index 30a1e2f533d062676bba6dcfea253d24d9d5f35a..b8fb76fc99a285eb3ec29f84de6052bfd9dfef55 100755 (executable)
--- a/crunch_scripts/arvados-bcbio-nextgen.py
+++ b/crunch_scripts/arvados-bcbio-nextgen.py
@@ -15,7 +15,7 @@ t = arvados.current_task().tmpdir
 
 os.unlink("/usr/local/share/bcbio-nextgen/galaxy")
 os.mkdir("/usr/local/share/bcbio-nextgen/galaxy")
-shutil.copy("/usr/local/share/bcbio-nextgen/galaxy/config/bcbio_system.yaml", "/usr/local/share/bcbio-nextgen/galaxy")
+shutil.copy("/usr/local/share/bcbio-nextgen/config/bcbio_system.yaml", "/usr/local/share/bcbio-nextgen/galaxy")
 
 os.mkdir("/usr/local/share/bcbio-nextgen/galaxy/tool-data")