3505: Move helper scripts into crunchutil module. In run-command, added
authorPeter Amstutz <peter.amstutz@curoverse.com>
Thu, 14 Aug 2014 15:35:06 +0000 (11:35 -0400)
committerPeter Amstutz <peter.amstutz@curoverse.com>
Thu, 14 Aug 2014 15:35:06 +0000 (11:35 -0400)
commiteb6992db915a1fea2a8f9acfccf26d2d091e66e0
tree208f45a80ca9f0a374b28b20783dd214ff7f8770
parent02d6330526fbd94f4a1d711ee6ffc18a1553febf
3505: Move helper scripts into crunchutil module.  In run-command, added
task.stdin redirection, and renamed save.stdout to task.stdout for consistency.
Stylistic change "x == None" and "x != None" to "x is None" and "x is not
None".
crunch_scripts/arvados-bcbio-nextgen.py
crunch_scripts/collection-merge
crunch_scripts/crunchutil/__init__.py [new file with mode: 0644]
crunch_scripts/crunchutil/robust_put.py [moved from crunch_scripts/robust_put.py with 99% similarity]
crunch_scripts/crunchutil/subst.py [moved from crunch_scripts/subst.py with 98% similarity]
crunch_scripts/crunchutil/vwd.py [moved from crunch_scripts/vwd.py with 98% similarity]
crunch_scripts/decompress-all.py
crunch_scripts/run-command
crunch_scripts/split-fastq.py