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3871: Encode/decode file and directory names to UTF-8
[arvados.git] / crunch_scripts /
2014-07-29 Peter Amstutztypo fix get_job_param() -> getjobparam() tree | commitdiff
2014-07-29 Peter Amstutzforeach just refers to other parameter to use as iterat... tree | commitdiff
2014-07-29 Peter AmstutzAdded "foreach" to run-command wrapper. Needs testing. tree | commitdiff
2014-07-29 Peter AmstutzDon't split fastq, just organize into directories. tree | commitdiff
2014-07-29 Peter AmstutzFull split-fastq wip tree | commitdiff
2014-07-09 radhikaMerge branch 'master' into 3106-modal-loading-indicator tree | commitdiff
2014-07-08 Peter AmstutzMerge branch 'resumable-output-upload'. Adds signal... tree | commitdiff
2014-07-08 Peter AmstutzActually use the resume cache tree | commitdiff
2014-07-08 radhikaMerge branch 'master' into 3203-workbench-tutorial tree | commitdiff
2014-07-08 Peter AmstutzTurns out sys.exit runs finally: blocks. tree | commitdiff
2014-07-08 Peter AmstutzAdd debugging tree | commitdiff
2014-07-08 Peter AmstutzWrong num args tree | commitdiff
2014-07-08 Peter AmstutzSigHandler object tree | commitdiff
2014-07-08 Peter AmstutzStill messing with signals. tree | commitdiff
2014-07-08 Peter AmstutzFix wrong number of parameters tree | commitdiff
2014-07-08 Peter AmstutzRecord signals a different way tree | commitdiff
2014-07-08 Peter AmstutzMore work on signal handling tree | commitdiff
2014-07-08 Peter AmstutzForward signals to process. tree | commitdiff
2014-07-08 Peter AmstutzUse resumable upload writing output in run-command tree | commitdiff
2014-07-08 radhikaMerge branch 'master' into 2380-ssh-doc tree | commitdiff
2014-07-08 Peter Amstutzmissing paren typo in arvados-bcbio-nextgen.py. refs... tree | commitdiff
2014-07-08 Peter Amstutzbc-bio script links gemini reference data. refs #2991 tree | commitdiff
2014-07-07 Peter Amstutzadd 'import sys' to arvados-bcbio-nextgen. no issue # tree | commitdiff
2014-07-07 radhikaMerge branch 'master' into 3140-project-content-tabs tree | commitdiff
2014-07-07 radhikaMerge branch 'master' into 2380-ssh-doc tree | commitdiff
2014-07-07 radhikaMerge branch 'master' into 3106-modal-loading-indicator tree | commitdiff
2014-07-07 Peter AmstutzDefault arvados-bcbio-nextgen pipeline to use freebayes... tree | commitdiff
2014-07-07 radhikaMerge branch 'master' into 3106-modal-loading-indicator tree | commitdiff
2014-07-07 Peter Amstutzarvados-bcbio-nextgen writes output now. Put write_dir... tree | commitdiff
2014-07-07 Peter AmstutzBugfix os.environ() -> os.environ[] no issue # tree | commitdiff
2014-07-07 Peter AmstutzMerge branch 'bcbio-nextgen' refs #2991 tree | commitdiff
2014-07-07 Peter AmstutzAdd -n cores to run bcbio in parallel on a multicore... tree | commitdiff
2014-07-07 Peter AmstutzAdd $(node.cores) substitution to run-program, and... tree | commitdiff
2014-07-07 Peter Amstutzrun-command retry after exception when writing output... tree | commitdiff
2014-07-04 Peter AmstutzMerge branch '2991-job-docker-images' refs #2991 tree | commitdiff
2014-07-04 Peter AmstutzMerge branch '2342-run-command-wrapper' refs #2342 tree | commitdiff
2014-07-03 Tim PierceMerge branch '2873-permission-links-ownership' tree | commitdiff
2014-07-03 Peter Amstutzfix bwa_index tree | commitdiff
2014-07-02 Peter AmstutzBacked that out, make a symlink to tool-data instead tree | commitdiff
2014-07-02 Peter Amstutztool-data in work tree | commitdiff
2014-07-02 Peter Amstutzfix sub R1 R2 tree | commitdiff
2014-07-02 Peter Amstutzrefer template directly tree | commitdiff
2014-07-02 Peter Amstutzwrite template tree | commitdiff
2014-07-02 Peter Amstutzopen for writing tree | commitdiff
2014-07-02 Peter Amstutzfix config copy tree | commitdiff
2014-07-02 Peter Amstutzfixed syntax error tree | commitdiff
2014-07-02 Peter AmstutzFixed +x tree | commitdiff
2014-07-02 Peter AmstutzFirst try at bcbio-nextgen script tree | commitdiff
2014-07-02 Peter AmstutzImprove output messages a bit tree | commitdiff
2014-07-01 Peter Amstutzfix find tree | commitdiff
2014-07-01 Peter AmstutzMore clever find tree | commitdiff
2014-07-01 Peter Amstutzmore status messages tree | commitdiff
2014-07-01 Peter AmstutzImprove error messages tree | commitdiff
2014-07-01 Peter AmstutzSet success/failed flag explicitly based on return... tree | commitdiff
2014-07-01 Peter AmstutzMake sure set return code non-zero. tree | commitdiff
2014-07-01 Tom CleggMerge branch '3099-spinner-assets' closes #3099 tree | commitdiff
2014-06-30 Ward VandewegeMerge branch 'master' into 3118-docker-fixes tree | commitdiff
2014-06-30 radhikaMerge branch 'master' into 3076-topnav-help tree | commitdiff
2014-06-30 radhikaMerge branch 'master' into 3088-project-chooser-on... tree | commitdiff
2014-06-30 radhikaMerge branch 'master' into 2659-anonymous-server-side tree | commitdiff
2014-06-30 Peter AmstutzAdd 'run-command' generic crunch command wrapper. ... tree | commitdiff
2014-02-25 Tom CleggMerge branch 'master' into 2060-edit-tags-in-workbench tree | commitdiff
2014-02-21 Peter AmstutzMerge branch 'master' of git.clinicalfuture.com:arvados tree | commitdiff
2014-02-21 Peter AmstutzMerge branch '1965-fuse-support-directories' tree | commitdiff
2014-02-21 Peter AmstutzHash now uses get_task_param_mount() to read from fuse... tree | commitdiff
2014-01-22 Peter AmstutzMerge remote-tracking branch 'origin' into 1786-replace... tree | commitdiff
2014-01-07 Peter AmstutzMerge branch '1685-api-server-redirect-to-workbench' tree | commitdiff
2014-01-03 Tom CleggRemove json.dumps() from example and tutorial code. tree | commitdiff
2013-12-27 Peter AmstutzMerge branch '1636-inactive-user' into 1678-new-active... tree | commitdiff
2013-12-27 Peter AmstutzMerge remote-tracking branch 'remotes/origin/1636-inact... tree | commitdiff
2013-12-26 Peter AmstutzMerge remote-tracking branch 'origin' into 1678-new... tree | commitdiff
2013-12-26 Tim PierceMerge branch '1608-api-documentation' of git.clinicalfu... tree | commitdiff
2013-12-23 Tom CleggUse arvados.api('v1') accessor instead of arvados.servi... tree | commitdiff
2013-12-12 Peter AmstutzMerge remote-tracking branch 'origin' into 1495-crunch... tree | commitdiff
2013-12-12 Tom CleggRevert "Rename annotation DepthOfCoverage to Coverage" tree | commitdiff
2013-12-12 Tom CleggRename annotation DepthOfCoverage to Coverage tree | commitdiff
2013-12-12 Tom CleggRemove unused module import. tree | commitdiff
2013-12-11 Peter AmstutzMerge branch '1637-improve-arv-tutorial' tree | commitdiff
2013-12-10 Tom CleggAdd docstrings to arvados_samtools module. tree | commitdiff
2013-12-10 Tom CleggMerge branch '1646-arv-put' tree | commitdiff
2013-12-10 Tom CleggClean up arvados_bwa module and add docstrings. tree | commitdiff
2013-12-10 Tom CleggMerge branch 'master' into 1646-arv-put tree | commitdiff
2013-12-09 Tim PierceMerge branch '1587-fix-test-suites-in-devsandbox' tree | commitdiff
2013-12-09 Tom CleggUse body={...} instead of object_type=json.dumps({... tree | commitdiff
2013-12-09 Tom CleggAdd example scripts and libraries for bwa, samtools... tree | commitdiff
2013-10-07 Tom Cleggadd crunch scripts for Real Time Genomics pipeline tree | commitdiff
2013-09-15 Tom Cleggadd crunch_scripts/file-select tree | commitdiff
2013-07-17 Tom Cleggfix namespace tree | commitdiff
2013-07-16 Tom Cleggadd collection-merge script tree | commitdiff
2013-07-16 Tom Cleggcomments tree | commitdiff
2013-07-11 Tom Cleggadd GATK2 VariantFiltration example crunch script tree | commitdiff
2013-07-10 Tom Clegguse pattern as regexp tree | commitdiff
2013-06-28 Tom Cleggadd pgp-survey-import tree | commitdiff
2013-06-27 Tom Cleggadd pgp-survey-parse tree | commitdiff
2013-06-25 Tom Cleggfix permissions and bugs, use decompressed_name in... tree | commitdiff
2013-06-25 Tom Clegghash and grep examples for new reader/writer tools tree | commitdiff
2013-05-11 Tom Cleggadd crunch_scripts/hash tree | commitdiff