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Merge branch 'master' into 3036-collection-uuids
[arvados.git]
/
crunch_scripts
/
2014-07-04
Peter Amstutz
Merge branch '2991-job-docker-images' refs #2991
tree
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commitdiff
2014-07-04
Peter Amstutz
Merge branch '2342-run-command-wrapper' refs #2342
tree
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commitdiff
2014-07-03
Tim Pierce
Merge branch '2873-permission-links-ownership'
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commitdiff
2014-07-03
Peter Amstutz
fix bwa_index
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commitdiff
2014-07-02
Peter Amstutz
Backed that out, make a symlink to tool-data instead
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commitdiff
2014-07-02
Peter Amstutz
tool-data in work
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commitdiff
2014-07-02
Peter Amstutz
fix sub R1 R2
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commitdiff
2014-07-02
Peter Amstutz
refer template directly
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commitdiff
2014-07-02
Peter Amstutz
write template
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commitdiff
2014-07-02
Peter Amstutz
open for writing
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commitdiff
2014-07-02
Peter Amstutz
fix config copy
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commitdiff
2014-07-02
Peter Amstutz
fixed syntax error
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commitdiff
2014-07-02
Peter Amstutz
Fixed +x
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commitdiff
2014-07-02
Peter Amstutz
First try at bcbio-nextgen script
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commitdiff
2014-07-02
Peter Amstutz
Improve output messages a bit
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commitdiff
2014-07-01
Peter Amstutz
fix find
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commitdiff
2014-07-01
Peter Amstutz
More clever find
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commitdiff
2014-07-01
Peter Amstutz
more status messages
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commitdiff
2014-07-01
Peter Amstutz
Improve error messages
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commitdiff
2014-07-01
Peter Amstutz
Set success/failed flag explicitly based on return...
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commitdiff
2014-07-01
Peter Amstutz
Make sure set return code non-zero.
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commitdiff
2014-07-01
Tom Clegg
Merge branch '3099-spinner-assets' closes #3099
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commitdiff
2014-06-30
Ward Vandewege
Merge branch 'master' into 3118-docker-fixes
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commitdiff
2014-06-30
radhika
Merge branch 'master' into 3076-topnav-help
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commitdiff
2014-06-30
radhika
Merge branch 'master' into 3088-project-chooser-on...
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commitdiff
2014-06-30
radhika
Merge branch 'master' into 2659-anonymous-server-side
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commitdiff
2014-06-30
Peter Amstutz
Add 'run-command' generic crunch command wrapper. ...
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commitdiff
2014-02-25
Tom Clegg
Merge branch 'master' into 2060-edit-tags-in-workbench
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commitdiff
2014-02-21
Peter Amstutz
Merge branch 'master' of git.clinicalfuture.com:arvados
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commitdiff
2014-02-21
Peter Amstutz
Merge branch '1965-fuse-support-directories'
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commitdiff
2014-02-21
Peter Amstutz
Hash now uses get_task_param_mount() to read from fuse...
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commitdiff
2014-01-22
Peter Amstutz
Merge remote-tracking branch 'origin' into 1786-replace...
tree
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commitdiff
2014-01-07
Peter Amstutz
Merge branch '1685-api-server-redirect-to-workbench'
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commitdiff
2014-01-03
Tom Clegg
Remove json.dumps() from example and tutorial code.
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commitdiff
2013-12-27
Peter Amstutz
Merge branch '1636-inactive-user' into 1678-new-active...
tree
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commitdiff
2013-12-27
Peter Amstutz
Merge remote-tracking branch 'remotes/origin/1636-inact...
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commitdiff
2013-12-26
Peter Amstutz
Merge remote-tracking branch 'origin' into 1678-new...
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commitdiff
2013-12-26
Tim Pierce
Merge branch '1608-api-documentation' of git.clinicalfu...
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commitdiff
2013-12-23
Tom Clegg
Use arvados.api('v1') accessor instead of arvados.servi...
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commitdiff
2013-12-12
Peter Amstutz
Merge remote-tracking branch 'origin' into 1495-crunch...
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commitdiff
2013-12-12
Tom Clegg
Revert "Rename annotation DepthOfCoverage to Coverage"
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commitdiff
2013-12-12
Tom Clegg
Rename annotation DepthOfCoverage to Coverage
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commitdiff
2013-12-12
Tom Clegg
Remove unused module import.
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commitdiff
2013-12-11
Peter Amstutz
Merge branch '1637-improve-arv-tutorial'
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commitdiff
2013-12-10
Tom Clegg
Add docstrings to arvados_samtools module.
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commitdiff
2013-12-10
Tom Clegg
Merge branch '1646-arv-put'
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commitdiff
2013-12-10
Tom Clegg
Clean up arvados_bwa module and add docstrings.
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commitdiff
2013-12-10
Tom Clegg
Merge branch 'master' into 1646-arv-put
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commitdiff
2013-12-09
Tim Pierce
Merge branch '1587-fix-test-suites-in-devsandbox'
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commitdiff
2013-12-09
Tom Clegg
Use body={...} instead of object_type=json.dumps({...
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commitdiff
2013-12-09
Tom Clegg
Add example scripts and libraries for bwa, samtools...
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commitdiff
2013-10-07
Tom Clegg
add crunch scripts for Real Time Genomics pipeline
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commitdiff
2013-09-15
Tom Clegg
add crunch_scripts/file-select
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commitdiff
2013-07-17
Tom Clegg
fix namespace
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commitdiff
2013-07-16
Tom Clegg
add collection-merge script
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commitdiff
2013-07-16
Tom Clegg
comments
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commitdiff
2013-07-11
Tom Clegg
add GATK2 VariantFiltration example crunch script
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commitdiff
2013-07-10
Tom Clegg
use pattern as regexp
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commitdiff
2013-06-28
Tom Clegg
add pgp-survey-import
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commitdiff
2013-06-27
Tom Clegg
add pgp-survey-parse
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commitdiff
2013-06-25
Tom Clegg
fix permissions and bugs, use decompressed_name in...
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commitdiff
2013-06-25
Tom Clegg
hash and grep examples for new reader/writer tools
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commitdiff
2013-05-11
Tom Clegg
add crunch_scripts/hash
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commitdiff