Merge branch 'master' into 3036-collection-uuids
[arvados.git] / crunch_scripts /
2014-07-04 Peter AmstutzMerge branch '2991-job-docker-images' refs #2991
2014-07-04 Peter AmstutzMerge branch '2342-run-command-wrapper' refs #2342
2014-07-03 Tim PierceMerge branch '2873-permission-links-ownership'
2014-07-03 Peter Amstutzfix bwa_index
2014-07-02 Peter AmstutzBacked that out, make a symlink to tool-data instead
2014-07-02 Peter Amstutztool-data in work
2014-07-02 Peter Amstutzfix sub R1 R2
2014-07-02 Peter Amstutzrefer template directly
2014-07-02 Peter Amstutzwrite template
2014-07-02 Peter Amstutzopen for writing
2014-07-02 Peter Amstutzfix config copy
2014-07-02 Peter Amstutzfixed syntax error
2014-07-02 Peter AmstutzFixed +x
2014-07-02 Peter AmstutzFirst try at bcbio-nextgen script
2014-07-02 Peter AmstutzImprove output messages a bit
2014-07-01 Peter Amstutzfix find
2014-07-01 Peter AmstutzMore clever find
2014-07-01 Peter Amstutzmore status messages
2014-07-01 Peter AmstutzImprove error messages
2014-07-01 Peter AmstutzSet success/failed flag explicitly based on return...
2014-07-01 Peter AmstutzMake sure set return code non-zero.
2014-07-01 Tom CleggMerge branch '3099-spinner-assets' closes #3099
2014-06-30 Ward VandewegeMerge branch 'master' into 3118-docker-fixes
2014-06-30 radhikaMerge branch 'master' into 3076-topnav-help
2014-06-30 radhikaMerge branch 'master' into 3088-project-chooser-on...
2014-06-30 radhikaMerge branch 'master' into 2659-anonymous-server-side
2014-06-30 Peter AmstutzAdd 'run-command' generic crunch command wrapper. ...
2014-02-25 Tom CleggMerge branch 'master' into 2060-edit-tags-in-workbench
2014-02-21 Peter AmstutzMerge branch 'master' of git.clinicalfuture.com:arvados
2014-02-21 Peter AmstutzMerge branch '1965-fuse-support-directories'
2014-02-21 Peter AmstutzHash now uses get_task_param_mount() to read from fuse...
2014-01-22 Peter AmstutzMerge remote-tracking branch 'origin' into 1786-replace...
2014-01-07 Peter AmstutzMerge branch '1685-api-server-redirect-to-workbench'
2014-01-03 Tom CleggRemove json.dumps() from example and tutorial code.
2013-12-27 Peter AmstutzMerge branch '1636-inactive-user' into 1678-new-active...
2013-12-27 Peter AmstutzMerge remote-tracking branch 'remotes/origin/1636-inact...
2013-12-26 Peter AmstutzMerge remote-tracking branch 'origin' into 1678-new...
2013-12-26 Tim PierceMerge branch '1608-api-documentation' of git.clinicalfu...
2013-12-23 Tom CleggUse arvados.api('v1') accessor instead of arvados.servi...
2013-12-12 Peter AmstutzMerge remote-tracking branch 'origin' into 1495-crunch...
2013-12-12 Tom CleggRevert "Rename annotation DepthOfCoverage to Coverage"
2013-12-12 Tom CleggRename annotation DepthOfCoverage to Coverage
2013-12-12 Tom CleggRemove unused module import.
2013-12-11 Peter AmstutzMerge branch '1637-improve-arv-tutorial'
2013-12-10 Tom CleggAdd docstrings to arvados_samtools module.
2013-12-10 Tom CleggMerge branch '1646-arv-put'
2013-12-10 Tom CleggClean up arvados_bwa module and add docstrings.
2013-12-10 Tom CleggMerge branch 'master' into 1646-arv-put
2013-12-09 Tim PierceMerge branch '1587-fix-test-suites-in-devsandbox'
2013-12-09 Tom CleggUse body={...} instead of object_type=json.dumps({...
2013-12-09 Tom CleggAdd example scripts and libraries for bwa, samtools...
2013-10-07 Tom Cleggadd crunch scripts for Real Time Genomics pipeline
2013-09-15 Tom Cleggadd crunch_scripts/file-select
2013-07-17 Tom Cleggfix namespace
2013-07-16 Tom Cleggadd collection-merge script
2013-07-16 Tom Cleggcomments
2013-07-11 Tom Cleggadd GATK2 VariantFiltration example crunch script
2013-07-10 Tom Clegguse pattern as regexp
2013-06-28 Tom Cleggadd pgp-survey-import
2013-06-27 Tom Cleggadd pgp-survey-parse
2013-06-25 Tom Cleggfix permissions and bugs, use decompressed_name in...
2013-06-25 Tom Clegghash and grep examples for new reader/writer tools
2013-05-11 Tom Cleggadd crunch_scripts/hash