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3147: Add retry support to PySDK list_all utility.
[arvados.git]
/
crunch_scripts
/
2014-09-18
Phil Hodgson
Merge branch 'master' into 3338-tab-counts
tree
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commitdiff
2014-09-17
mishaz
Merge branch 'update-go-sdk-documentation'
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commitdiff
2014-09-17
Tim Pierce
Merge branch '3705-keep-blockworklist'
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commitdiff
2014-09-15
radhika
Merge branch 'master' into 2761-diagnostic-suite
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commitdiff
2014-09-15
Tom Clegg
3550: Merge branch 'master' into 3550-local-pipeline
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commitdiff
2014-09-12
Peter Amstutz
Merge branch '3187-start-finish-timestamps-tasks-pipeli...
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commitdiff
2014-09-11
radhika
Merge branch 'master' into 3654-combine-selections
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commitdiff
2014-09-11
Brett Smith
Clean up manifest whitespace in split-fastq.
tree
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commitdiff
2014-09-09
radhika
Merge branch 'master' into 3654-combine-selections
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commitdiff
2014-09-09
Peter Amstutz
Merge branch '3453-arv-list-docker-images' closes ...
tree
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commitdiff
2014-09-09
Peter Amstutz
Merge branch 'master' into 3586-job-priority closes...
tree
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commitdiff
2014-09-08
Peter Amstutz
Merge branch '3644-arv-mount-projects' closes #3644
tree
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commitdiff
2014-09-08
Tim Pierce
3823: bug fixes for arvados-bcbio-nextgen.py
tree
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commitdiff
2014-09-08
Peter Amstutz
Merge branch 'master' into 3644-arv-mount-projects
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commitdiff
2014-09-02
Peter Amstutz
Merge branch 'master' into 3586-job-priority
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commitdiff
2014-08-28
radhika
Merge branch 'master' into 3714-report-issue-issues
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commitdiff
2014-08-28
radhika
Merge branch 'master' into 3637-copy-selections
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commitdiff
2014-08-28
Peter Amstutz
Merge branch '3719-improve-subst-error-reporting' close...
tree
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commitdiff
2014-08-28
Peter Amstutz
3719: Python style/wording fixes.
tree
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commitdiff
2014-08-28
Peter Amstutz
3719: Robust-put uses run-command logger.
tree
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commitdiff
2014-08-28
Peter Amstutz
3719: run-command uses its own logger instead of the...
tree
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commitdiff
2014-08-28
Peter Amstutz
3719: Raise more specific SubstitutionError instead...
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commitdiff
2014-08-27
Tom Clegg
3354: Merge branch 'master' into 3354-render-textile
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commitdiff
2014-08-26
Tom Clegg
Merge branch '3627-selectable-projects' closes #3627
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commitdiff
2014-08-26
radhika
Merge branch 'master' into 3642-search-for-active-only
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commitdiff
2014-08-26
radhika
Merge branch 'master' into 3620-admin-only-gear-menu
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commitdiff
2014-08-26
radhika
Merge branch 'master' into 3112-report-bug
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commitdiff
2014-08-26
Peter Amstutz
Fixed missing import in robust_put. no issue #
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commitdiff
2014-08-20
Phil Hodgson
Merge branch 'master' into 3354-render-textile
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commitdiff
2014-08-19
Peter Amstutz
Merge branch 'master' into 3036-collection-uuids
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commitdiff
2014-08-18
Tom Clegg
3114: Merge branch 'master' into 3114-copy-to-project
tree
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commitdiff
2014-08-16
Tom Clegg
Merge branch '2800-python-global-state' into 2800-pgs
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commitdiff
2014-08-14
Tom Clegg
3551: Merge branch 'master' into 3551-go-layout
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commitdiff
2014-08-14
radhika
Merge branch 'master' into 3112-report-bug
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commitdiff
2014-08-14
Peter Amstutz
Merge branch '3505-virtual-work-dir' refs #3505
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commitdiff
2014-08-14
Peter Amstutz
Merge branch 'master' into 3505-virtual-work-dir
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commitdiff
2014-08-14
Peter Amstutz
3505: tinker with logging
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commitdiff
2014-08-14
Peter Amstutz
3505: Fix typo in run-command
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commitdiff
2014-08-14
Peter Amstutz
3505: Move helper scripts into crunchutil module. ...
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commitdiff
2014-08-13
Tom Clegg
3551: Merge branch 'master' into 3551-go-layout
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commitdiff
2014-08-13
Peter Amstutz
3505: Fixed typo comparison of list against 0 instead...
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commitdiff
2014-08-13
Peter Amstutz
3505: Adjust order of initialization to reflect potenti...
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commitdiff
2014-08-13
Peter Amstutz
Added virtual working directory "task.vwd" option to...
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commitdiff
2014-08-12
radhika
Merge branch 'master' into 3296-user-profile
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commitdiff
2014-08-12
Tom Clegg
Merge branch '3531-sort-jobs-with-pipelines' closes...
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commitdiff
2014-08-12
Peter Amstutz
Fix regular expression in decompress-all.py refs ...
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commitdiff
2014-08-12
Peter Amstutz
Fix syntax error in decompress-all.py refs #3373
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commitdiff
2014-08-12
Peter Amstutz
Merge branch '3373-improve-gatk3-snv-pipeline' closes...
tree
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commitdiff
2014-08-12
Peter Amstutz
3373: Test filename extension before attempting to...
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commitdiff
2014-08-08
Peter Amstutz
3373: split-fastq: Fix loop
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commitdiff
2014-08-08
Peter Amstutz
3373: split-fastq: Fix regex again
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commitdiff
2014-08-08
Peter Amstutz
3373: Fix wrong regex group
tree
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commitdiff
2014-08-08
Peter Amstutz
3373: Fix syntax error in split-fastq
tree
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commitdiff
2014-08-08
Peter Amstutz
3373: more run-command cleanup, global p -> taskp,...
tree
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commitdiff
2014-08-08
Peter Amstutz
3373: Switch run-command to use python logging instead...
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commitdiff
2014-08-08
Peter Amstutz
3373: split-fastq: merge loops to capture both single...
tree
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commitdiff
2014-08-08
Peter Amstutz
3373: decompress-all: cleaned up code a bit. Fail...
tree
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commitdiff
2014-08-07
Peter Amstutz
Merge branch 'master' into 3373-improve-gatk3-snv-pipeline
tree
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commitdiff
2014-08-06
Peter Amstutz
Merge branch 'master' into 3373-improve-gatk3-snv-pipeline
tree
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commitdiff
2014-08-05
Peter Amstutz
Disable chunking
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commitdiff
2014-08-05
Peter Amstutz
Chunking fastq seems to work, but is very slow.
tree
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commitdiff
2014-08-05
Peter Amstutz
arvados.LOCATOR
tree
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commitdiff
2014-08-05
Peter Amstutz
import string
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commitdiff
2014-08-05
Peter Amstutz
Fix syntax error
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commitdiff
2014-08-05
Peter Amstutz
Check for None
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commitdiff
2014-08-05
Peter Amstutz
Working on split-fastq to actually split the fastq...
tree
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commitdiff
2014-08-05
Peter Amstutz
Renamed "job.src" to "job.srcdir", "job.id" to "job...
tree
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commitdiff
2014-08-04
Peter Amstutz
$(link ...) now expects complete path.
tree
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commitdiff
2014-08-04
Peter Amstutz
Merge branch 'master' into 3373-improve-gatk3-snv-pipeline
tree
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commitdiff
2014-08-04
Peter Amstutz
Merge branch '3373-improve-gatk3-snv-pipeline' of git...
tree
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commitdiff
2014-08-04
Peter Amstutz
Simplified collection-merge. Added comments to collect...
tree
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commitdiff
2014-08-04
Peter Amstutz
Works now
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commitdiff
2014-08-04
Peter Amstutz
fix parameters
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commitdiff
2014-08-04
Peter Amstutz
Decompress-all wip
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commitdiff
2014-08-01
Peter Amstutz
Added $(task.outdir) and $(job.src)
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commitdiff
2014-07-30
Peter Amstutz
Fix $(node.cores)
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commitdiff
2014-07-30
Peter Amstutz
str or unicode
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commitdiff
2014-07-30
Peter Amstutz
extra / after dir
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commitdiff
2014-07-30
Peter Amstutz
Better error from glob
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commitdiff
2014-07-30
Peter Amstutz
Pretty print
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commitdiff
2014-07-30
Peter Amstutz
Rearranged exception handling a little more
tree
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commitdiff
2014-07-30
Peter Amstutz
More logging
tree
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commitdiff
2014-07-30
Peter Amstutz
Print traceback on exception
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commitdiff
2014-07-30
Peter Amstutz
Set first task to success
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commitdiff
2014-07-30
Peter Amstutz
import copy
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commitdiff
2014-07-30
Peter Amstutz
.st_mode
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commitdiff
2014-07-30
Peter Amstutz
import stat
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commitdiff
2014-07-30
Peter Amstutz
Fix syntax error
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commitdiff
2014-07-30
Peter Amstutz
Refactored and generalized list expansion, can use...
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commitdiff
2014-07-30
Peter Amstutz
Simpler split-fastq, doesn't try to upload the collecti...
tree
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commitdiff
2014-07-29
Peter Amstutz
Change collection create request
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commitdiff
2014-07-29
Peter Amstutz
Debug manifest format to see why api server is rejecting it
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commitdiff
2014-07-29
Peter Amstutz
debug print manifest_text
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commitdiff
2014-07-29
Peter Amstutz
Left debugging in by accident
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commitdiff
2014-07-29
Peter Amstutz
Same bug, different place
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commitdiff
2014-07-29
Peter Amstutz
Input is "reads" not "input"
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commitdiff
2014-07-29
Peter Amstutz
typo fix get_job_param() -> getjobparam()
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commitdiff
2014-07-29
Peter Amstutz
foreach just refers to other parameter to use as iterat...
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commitdiff
2014-07-29
Peter Amstutz
Added "foreach" to run-command wrapper. Needs testing.
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commitdiff
2014-07-29
Peter Amstutz
Don't split fastq, just organize into directories.
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