projects
/
arvados.git
/ commitdiff
summary
|
shortlog
|
log
|
commit
| commitdiff |
tree
raw
|
patch
| inline |
side by side
(parent:
b5393c7
)
3373: split-fastq: Fix regex again
author
Peter Amstutz <peter.amstutz@curoverse.com>
Fri, 8 Aug 2014 20:45:45 +0000
(16:45 -0400)
committer
Peter Amstutz <peter.amstutz@curoverse.com>
Fri, 8 Aug 2014 20:45:45 +0000
(16:45 -0400)
crunch_scripts/split-fastq.py
patch
|
blob
|
history
diff --git
a/crunch_scripts/split-fastq.py
b/crunch_scripts/split-fastq.py
index e2421027771de54787d2261a96f4f2cc45eb3df9..8b80adf6359e34a2ebab9c01442832ba78034333 100755
(executable)
--- a/
crunch_scripts/split-fastq.py
+++ b/
crunch_scripts/split-fastq.py
@@
-88,7
+88,7
@@
def splitfastq(p):
if count % 10000 == 0:
print >>sys.stderr, "Record %s at %s" % (count, p[i]["end"])
-prog = re.compile(r'(.*?)(_
12
)?\.fastq(\.gz)?$')
+prog = re.compile(r'(.*?)(_
[12]
)?\.fastq(\.gz)?$')
# Look for fastq files
for s in inp.all_streams():