git.arvados.org - arvados.git/history - crunch_scripts/arvados-bcbio-nextgen.py

[arvados.git] / crunch_scripts / arvados-bcbio-nextgen.py

2016-03-01	Peter Amstutz	Add 'tools/arvbox/' from commit 'd3d368758db1f4a9fa5b89...	blob \| commitdiff \| raw
2015-03-23	Joshua C. Randall	Merge pull request #1 from curoverse/master	blob \| commitdiff \| raw
2015-01-16	Peter Amstutz	Add 'apps/arv-web/' from commit 'f9732ad8460d013c2f2836...	blob \| commitdiff \| raw
2014-10-03	mishaz	Merge branch 'master' of git.curoverse.com:arvados...	blob \| commitdiff \| raw
2014-09-15	Tim Pierce	Merge branch 'master' into 3699-arv-copy	blob \| commitdiff \| raw
2014-09-15	Tom Clegg	3550: Merge branch 'master' into 3550-local-pipeline	blob \| commitdiff \| raw
2014-09-09	radhika	Merge branch 'master' into 3654-combine-selections	blob \| commitdiff \| raw
2014-09-09	Peter Amstutz	Merge branch '3453-arv-list-docker-images' closes ...	blob \| commitdiff \| raw
2014-09-09	Peter Amstutz	Merge branch 'master' into 3586-job-priority closes...	blob \| commitdiff \| raw
2014-09-08	Peter Amstutz	Merge branch '3644-arv-mount-projects' closes #3644	blob \| commitdiff \| raw
2014-09-08	Tim Pierce	3823: bug fixes for arvados-bcbio-nextgen.py	blob \| commitdiff \| raw
2014-08-20	Phil Hodgson	Merge branch 'master' into 3354-render-textile	blob \| commitdiff \| raw \| diff to current
2014-08-19	Peter Amstutz	Merge branch 'master' into 3036-collection-uuids	blob \| commitdiff \| raw \| diff to current
2014-08-18	Tom Clegg	3114: Merge branch 'master' into 3114-copy-to-project	blob \| commitdiff \| raw \| diff to current
2014-08-16	Tom Clegg	Merge branch '2800-python-global-state' into 2800-pgs	blob \| commitdiff \| raw \| diff to current
2014-08-14	Tom Clegg	3551: Merge branch 'master' into 3551-go-layout	blob \| commitdiff \| raw \| diff to current
2014-08-14	radhika	Merge branch 'master' into 3112-report-bug	blob \| commitdiff \| raw \| diff to current
2014-08-14	Peter Amstutz	Merge branch '3505-virtual-work-dir' refs #3505	blob \| commitdiff \| raw \| diff to current
2014-08-14	Peter Amstutz	Merge branch 'master' into 3505-virtual-work-dir	blob \| commitdiff \| raw \| diff to current
2014-08-14	Peter Amstutz	3505: Move helper scripts into crunchutil module. ...	blob \| commitdiff \| raw \| diff to current
2014-07-09	radhika	Merge branch 'master' into 3106-modal-loading-indicator	blob \| commitdiff \| raw \| diff to current
2014-07-08	radhika	Merge branch 'master' into 2380-ssh-doc	blob \| commitdiff \| raw \| diff to current
2014-07-08	Peter Amstutz	missing paren typo in arvados-bcbio-nextgen.py. refs...	blob \| commitdiff \| raw \| diff to current
2014-07-08	Peter Amstutz	bc-bio script links gemini reference data. refs #2991	blob \| commitdiff \| raw \| diff to current
2014-07-07	Peter Amstutz	add 'import sys' to arvados-bcbio-nextgen. no issue #	blob \| commitdiff \| raw \| diff to current
2014-07-07	radhika	Merge branch 'master' into 3140-project-content-tabs	blob \| commitdiff \| raw \| diff to current
2014-07-07	radhika	Merge branch 'master' into 2380-ssh-doc	blob \| commitdiff \| raw \| diff to current
2014-07-07	radhika	Merge branch 'master' into 3106-modal-loading-indicator	blob \| commitdiff \| raw \| diff to current
2014-07-07	Peter Amstutz	Default arvados-bcbio-nextgen pipeline to use freebayes...	blob \| commitdiff \| raw \| diff to current
2014-07-07	radhika	Merge branch 'master' into 3106-modal-loading-indicator	blob \| commitdiff \| raw \| diff to current
2014-07-07	Peter Amstutz	arvados-bcbio-nextgen writes output now. Put write_dir...	blob \| commitdiff \| raw \| diff to current
2014-07-07	Peter Amstutz	Bugfix os.environ() -> os.environ[] no issue #	blob \| commitdiff \| raw \| diff to current
2014-07-07	Peter Amstutz	Merge branch 'bcbio-nextgen' refs #2991	blob \| commitdiff \| raw \| diff to current
2014-07-07	Peter Amstutz	Add -n cores to run bcbio in parallel on a multicore...	blob \| commitdiff \| raw \| diff to current
2014-07-03	Peter Amstutz	fix bwa_index	blob \| commitdiff \| raw \| diff to current
2014-07-02	Peter Amstutz	Backed that out, make a symlink to tool-data instead	blob \| commitdiff \| raw \| diff to current
2014-07-02	Peter Amstutz	tool-data in work	blob \| commitdiff \| raw \| diff to current
2014-07-02	Peter Amstutz	fix sub R1 R2	blob \| commitdiff \| raw \| diff to current
2014-07-02	Peter Amstutz	refer template directly	blob \| commitdiff \| raw \| diff to current
2014-07-02	Peter Amstutz	write template	blob \| commitdiff \| raw \| diff to current
2014-07-02	Peter Amstutz	open for writing	blob \| commitdiff \| raw \| diff to current
2014-07-02	Peter Amstutz	fix config copy	blob \| commitdiff \| raw \| diff to current
2014-07-02	Peter Amstutz	fixed syntax error	blob \| commitdiff \| raw \| diff to current
2014-07-02	Peter Amstutz	Fixed +x	blob \| commitdiff \| raw \| diff to current
2014-07-02	Peter Amstutz	First try at bcbio-nextgen script	blob \| commitdiff \| raw \| diff to current

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