Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
- "What is CWL?"
- "What is the goal of this training?"
objectives:
- "What is CWL?"
- "What is the goal of this training?"
objectives:
-- "Understand how the training will be motivated by an example analysis."
+- "Gain a high level understanding of the example analysis."
keypoints:
- "Common Workflow Language is a standard for describing data analysis workflows"
- "We will use an bioinformatics RNA-seq analysis as an example workflow, but does not require in-depth knowledge of biology."
keypoints:
- "Common Workflow Language is a standard for describing data analysis workflows"
- "We will use an bioinformatics RNA-seq analysis as an example workflow, but does not require in-depth knowledge of biology."
The entire process looks like this:
The entire process looks like this:
-![](/assets/img/RNAseqWorkflow.png){: height="400px"}
+![](../assets/img/RNAseqWorkflow.png){: height="400px"}
For this training, we are only concerned with the middle analytical
steps (skipping adapter trimming).
For this training, we are only concerned with the middle analytical
steps (skipping adapter trimming).
should have a grasp of the essential components of a workflow, and
have a basis for learning more.
should have a grasp of the essential components of a workflow, and
have a basis for learning more.
-These lessons are based on [Introduction to RNA-seq using
-high-performance computing
-(HPC)](https://github.com/hbctraining/Intro-to-rnaseq-hpc-O2) lessons
-developed by members of the teaching team at the Harvard Chan
-Bioinformatics Core (HBC). The original training, which includes
-additional lectures about the biology of RNA-seq, can be found at that
-link.
-
> ## Prerequisites
>
> This training assumes some basic familiarity with editing text files,
> ## Prerequisites
>
> This training assumes some basic familiarity with editing text files,
+These lessons are based on [Introduction to RNA-seq using
+high-performance computing
+(HPC)](https://github.com/hbctraining/Intro-to-rnaseq-hpc-O2) lessons
+developed by members of the teaching team at the Harvard Chan
+Bioinformatics Core (HBC). The original training, which includes
+additional lectures about the biology of RNA-seq, can be found at that
+link.
+