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19527: Load training-set flag from samples.csv.
[lightning.git]
/
import.go
2021-10-06
Tom Clegg
Save all ref tile data in slice 0.
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2021-08-06
Tom Clegg
Add copyright headers.
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2021-05-07
Tom Clegg
Export hgvs-onehot.
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2021-03-01
Tom Clegg
Bump import RAM.
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2021-03-01
Tom Clegg
Reduce import RAM.
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2021-02-08
Tom Clegg
Move command line tool to subdir.
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2020-12-18
Tom Clegg
Bump import memory.
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2020-12-02
Tom Clegg
Fix deadlock on error.
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2020-12-02
Tom Clegg
Improve import and vcf2fasta performance.
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2020-11-24
Tom Clegg
Concurrent-batches mode for vcf2fasta and import.
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2020-11-23
Tom Clegg
Propagate -match-chromosome arg to container.
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2020-11-19
Tom Clegg
Configurable chromosome name pattern.
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2020-11-13
Tom Clegg
Gzip gob files.
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2020-11-12
Tom Clegg
When not saving incomplete tilevars, still save hashes...
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2020-10-26
Tom Clegg
Better series palette.
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2020-10-25
Tom Clegg
Plot import stats.
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2020-10-25
Tom Clegg
Write import stats to stats.json.
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2020-10-22
Tom Clegg
Fix divide by zero.
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2020-10-14
Tom Clegg
Export HGVS.
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2020-10-12
Tom Clegg
Fix log message.
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2020-10-08
Tom Clegg
Allow importing all-hom (reference) data from single...
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2020-10-07
Tom Clegg
When writing library, write tags too.
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2020-09-25
Tom Clegg
Option to treat tiles with no-calls as regular tiles.
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2020-09-25
Tom Clegg
Option to output tile library when importing.
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2020-04-24
Tom Clegg
Log # duplicate tags.
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2020-04-23
Tom Clegg
Log out-of-order tags if -loglevel=debug.
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2020-04-08
Tom Clegg
More memory for import.
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2020-04-06
Tom Clegg
Propagate skip-ooo flag to container.
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2020-04-06
Tom Clegg
Option to skip/ignore out-of-order tags.
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2020-03-10
Tom Clegg
Container request priority flag.
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2020-03-05
Tom Clegg
Use more tiling workers than NumCPU.
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2020-03-05
Tom Clegg
Less verbose logging.
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2020-03-05
Tom Clegg
I/O pipeline, show arvados container logs.
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2020-03-04
Tom Clegg
Fix input arg in export.
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2020-03-03
Tom Clegg
Run "filter" and "export" in arvados containers.
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2020-03-02
Tom Clegg
Run "import" in arvados container.
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2020-03-02
Tom Clegg
Add import -o argument.
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2020-03-02
Tom Clegg
Don't require reference data when all inputs are fasta.
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2020-02-04
Tom Clegg
Split gvcf2numpy command into import and export-numpy.
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