Propagate -match-chromosome arg to container.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

diff --git a/import.go b/import.go
index f7e099b4e6718509514f28dfec911157a5c5ddbe..0d2d7379d184174a54766a9a4b4306adb14fb582 100644 (file)
--- a/import.go
+++ b/import.go
@@ -133,6 +133,7 @@ func (cmd *importer) RunCommand(prog string, args []string, stdin io.Reader, std
                        fmt.Sprintf("-skip-ooo=%v", cmd.skipOOO),
                        fmt.Sprintf("-output-tiles=%v", cmd.outputTiles),
                        fmt.Sprintf("-save-incomplete-tiles=%v", cmd.saveIncompleteTiles),
+                       "-match-chromosome", cmd.matchChromosome.String(),
                        "-output-stats", "/mnt/output/stats.json",
                        "-tag-library", cmd.tagLibraryFile,
                        "-ref", cmd.refFile,