git.arvados.org - lightning.git/history

2022-01-17	Tom Clegg	Use native client to read annotations.csv.	blob \| commitdiff \| raw
2021-08-06	Tom Clegg	Add copyright headers.	blob \| commitdiff \| raw \| diff to current
2021-02-08	Tom Clegg	Move command line tool to subdir.	blob \| commitdiff \| raw \| diff to current
2021-01-29	Tom Clegg	Fake a complete_genomics_pass_all preset.	blob \| commitdiff \| raw \| diff to current
2020-12-02	Tom Clegg	Don't pass -gvcf-type="" to gvcf_regions.py.	blob \| commitdiff \| raw \| diff to current
2020-12-02	Tom Clegg	Improve import and vcf2fasta performance.	blob \| commitdiff \| raw \| diff to current
2020-11-25	Tom Clegg	Use smaller machines for small batches.	blob \| commitdiff \| raw \| diff to current
2020-11-25	Tom Clegg	Use buffered writer to avoid overwhelming arv-mount.	blob \| commitdiff \| raw \| diff to current
2020-11-24	Tom Clegg	Concurrent-batches mode for vcf2fasta and import.	blob \| commitdiff \| raw \| diff to current
2020-11-22	Tom Clegg	Pass gvcf-type to gvcf_regions.	blob \| commitdiff \| raw \| diff to current
2020-04-03	Tom Clegg	Request more memory when using mask.	blob \| commitdiff \| raw \| diff to current
2020-04-03	Tom Clegg	Read contig sizes from vcf.	blob \| commitdiff \| raw \| diff to current
2020-04-02	Tom Clegg	Kill other children and exit early if one child process...	blob \| commitdiff \| raw \| diff to current
2020-04-02	Tom Clegg	Sort genome file same way as vcf regions.	blob \| commitdiff \| raw \| diff to current
2020-03-12	Tom Clegg	s/python/python2/	blob \| commitdiff \| raw \| diff to current
2020-03-12	Tom Clegg	Propagate genome arg.	blob \| commitdiff \| raw \| diff to current
2020-03-11	Tom Clegg	Don't pipe gvcf_regions to bedtools. Avoid short-read...	blob \| commitdiff \| raw \| diff to current
2020-03-11	Tom Clegg	Use named pipe for bcftools --mask data.	blob \| commitdiff \| raw \| diff to current
2020-03-11	Tom Clegg	Connect stdin/stdout in docker containers.	blob \| commitdiff \| raw \| diff to current
2020-03-11	Tom Clegg	No O_EXCL.	blob \| commitdiff \| raw \| diff to current
2020-03-11	Tom Clegg	Error reporting.	blob \| commitdiff \| raw \| diff to current
2020-03-10	Tom Clegg	Fix docker mounts.	blob \| commitdiff \| raw \| diff to current
2020-03-10	Tom Clegg	Generate genome file from fasta.	blob \| commitdiff \| raw \| diff to current
2020-03-10	Tom Clegg	Show stderr from children.	blob \| commitdiff \| raw \| diff to current
2020-03-10	Tom Clegg	Don't try to pass fd 3 to docker.	blob \| commitdiff \| raw \| diff to current
2020-03-10	Tom Clegg	vcf2fasta -mask cont'd.	blob \| commitdiff \| raw \| diff to current
2020-03-10	Tom Clegg	Pass gvcf_regions.py via mount.	blob \| commitdiff \| raw \| diff to current
2020-03-10	Tom Clegg	Container request priority flag.	blob \| commitdiff \| raw \| diff to current
2020-03-09	Tom Clegg	Add vcf2fasta -mask option.	blob \| commitdiff \| raw \| diff to current
2020-03-09	Tom Clegg	Add vcf2fasta command.	blob \| commitdiff \| raw \| diff to current

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