git.arvados.org - lightning.git/history

2022-11-28	Tom Clegg	Merge branch '19526-manhattan-plot'	blob \| commitdiff \| raw
2022-11-28	Tom Clegg	19526: Add manhattan plot.	blob \| commitdiff \| raw
2022-11-09	Tom Clegg	Merge branch '19524-pca'	blob \| commitdiff \| raw \| diff to current
2022-11-09	Tom Clegg	19527: choose-samples: training/validation set.	blob \| commitdiff \| raw \| diff to current
2022-11-07	Tom Clegg	choose-samples: training/validation set.	blob \| commitdiff \| raw \| diff to current
2022-10-14	Tom Clegg	Merge branch '19524-pca'	blob \| commitdiff \| raw \| diff to current
2022-10-14	Tom Clegg	19524: Remove obsolete pca cmds.	blob \| commitdiff \| raw \| diff to current
2022-03-16	Tom Clegg	Add tilestats cmd.	blob \| commitdiff \| raw \| diff to current
2022-01-31	Tom Clegg	Add dump command.	blob \| commitdiff \| raw \| diff to current
2021-12-29	Tom Clegg	More aggressive GC.	blob \| commitdiff \| raw \| diff to current
2021-10-28	Tom Clegg	Add anno2vcf command.	blob \| commitdiff \| raw \| diff to current
2021-09-13	Tom Clegg	Generate numpy matrices from slices.	blob \| commitdiff \| raw \| diff to current
2021-09-13	Tom Clegg	Always log version at startup.	blob \| commitdiff \| raw \| diff to current
2021-09-13	Tom Clegg	Slice imported data by tag#.	blob \| commitdiff \| raw \| diff to current
2021-08-06	Tom Clegg	Add copyright headers.	blob \| commitdiff \| raw \| diff to current
2021-06-15	Tom Clegg	Add "flake" command (read, tidy, write).	blob \| commitdiff \| raw \| diff to current
2021-02-19	Tom Clegg	Upgrade to debian bullseye to get bcftools 1.11.	blob \| commitdiff \| raw \| diff to current
2021-02-08	Tom Clegg	Move command line tool to subdir.	blob \| commitdiff \| raw \| diff to current
2021-01-18	Tom Clegg	Add dumpgob command.	blob \| commitdiff \| raw \| diff to current
2020-12-02	Tom Clegg	Improve import and vcf2fasta performance.	blob \| commitdiff \| raw \| diff to current
2020-11-05	Tom Clegg	Add numpy-common-variants sanity check.	blob \| commitdiff \| raw \| diff to current
2020-11-01	Tom Clegg	Write annotations along with numpy.	blob \| commitdiff \| raw \| diff to current
2020-10-28	Tom Clegg	Export tile annotations.	blob \| commitdiff \| raw \| diff to current
2020-10-25	Tom Clegg	Plot import stats.	blob \| commitdiff \| raw \| diff to current
2020-10-25	Tom Clegg	Write import stats to stats.json.	blob \| commitdiff \| raw \| diff to current
2020-10-25	Tom Clegg	Turn off timestamps in logs when not logging to a tty.	blob \| commitdiff \| raw \| diff to current
2020-10-20	Tom Clegg	Export VCF-ish.	blob \| commitdiff \| raw \| diff to current
2020-10-16	Tom Clegg	Add merge cmd.	blob \| commitdiff \| raw \| diff to current
2020-10-14	Tom Clegg	Export HGVS.	blob \| commitdiff \| raw \| diff to current
2020-10-07	Tom Clegg	Add stats command.	blob \| commitdiff \| raw \| diff to current
2020-09-17	Tom Clegg	Do PCA in Go.	blob \| commitdiff \| raw \| diff to current
2020-05-12	Tom Clegg	Add diff-fasta command.	blob \| commitdiff \| raw \| diff to current
2020-03-12	Tom Clegg	Add python2 to docker image.	blob \| commitdiff \| raw \| diff to current
2020-03-10	Tom Clegg	Generate genome file from fasta.	blob \| commitdiff \| raw \| diff to current
2020-03-10	Tom Clegg	Install bedtools.	blob \| commitdiff \| raw \| diff to current
2020-03-09	Tom Clegg	Add vcf2fasta command.	blob \| commitdiff \| raw \| diff to current
2020-03-04	Tom Clegg	Add plot subcommand.	blob \| commitdiff \| raw \| diff to current
2020-03-03	Tom Clegg	Add pca subcommand.	blob \| commitdiff \| raw \| diff to current
2020-02-05	Tom Clegg	Add filter subcommand.	blob \| commitdiff \| raw \| diff to current
2020-02-04	Tom Clegg	Split gvcf2numpy command into import and export-numpy.	blob \| commitdiff \| raw \| diff to current
2020-01-13	Tom Clegg	Initial tiling code.	blob \| commitdiff \| raw \| diff to current

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