10 "git.arvados.org/arvados.git/lib/cmd"
14 handler = cmd.Multi(map[string]cmd.Handler{
15 "version": cmd.Version,
16 "-version": cmd.Version,
17 "--version": cmd.Version,
19 "import": &importer{},
20 "export-numpy": &exportNumpy{},
21 "build-docker-image": &buildDockerImage{},
26 os.Exit(handler.RunCommand(os.Args[0], os.Args[1:], os.Stdin, os.Stdout, os.Stderr))
29 type buildDockerImage struct{}
31 func (cmd *buildDockerImage) RunCommand(prog string, args []string, stdin io.Reader, stdout, stderr io.Writer) int {
32 tmpdir, err := ioutil.TempDir("", "")
34 fmt.Fprint(stderr, err)
37 defer os.RemoveAll(tmpdir)
38 err = ioutil.WriteFile(tmpdir+"/Dockerfile", []byte(`FROM debian:10
40 RUN DEBIAN_FRONTEND=noninteractive apt-get install -y --no-install-recommends bcftools samtools
43 fmt.Fprint(stderr, err)
46 docker := exec.Command("docker", "build", "--tag=lightning-runtime", tmpdir)
47 docker.Stdout = os.Stdout
48 docker.Stderr = os.Stderr