projects
/
lightning.git
/ history
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
first ⋅ prev ⋅ next
19527: Enable choose-samples to work without case/control info.
[lightning.git]
/
vcf2fasta.go
2022-01-17
Tom Clegg
Use native client to read annotations.csv.
blob
|
commitdiff
|
raw
2021-08-06
Tom Clegg
Add copyright headers.
blob
|
commitdiff
|
raw
|
diff to current
2021-02-08
Tom Clegg
Move command line tool to subdir.
blob
|
commitdiff
|
raw
|
diff to current
2021-01-29
Tom Clegg
Fake a complete_genomics_pass_all preset.
blob
|
commitdiff
|
raw
|
diff to current
2020-12-02
Tom Clegg
Don't pass -gvcf-type="" to gvcf_regions.py.
blob
|
commitdiff
|
raw
|
diff to current
2020-12-02
Tom Clegg
Improve import and vcf2fasta performance.
blob
|
commitdiff
|
raw
|
diff to current
2020-11-25
Tom Clegg
Use smaller machines for small batches.
blob
|
commitdiff
|
raw
|
diff to current
2020-11-25
Tom Clegg
Use buffered writer to avoid overwhelming arv-mount.
blob
|
commitdiff
|
raw
|
diff to current
2020-11-24
Tom Clegg
Concurrent-batches mode for vcf2fasta and import.
blob
|
commitdiff
|
raw
|
diff to current
2020-11-22
Tom Clegg
Pass gvcf-type to gvcf_regions.
blob
|
commitdiff
|
raw
|
diff to current
2020-04-03
Tom Clegg
Request more memory when using mask.
blob
|
commitdiff
|
raw
|
diff to current
2020-04-03
Tom Clegg
Read contig sizes from vcf.
blob
|
commitdiff
|
raw
|
diff to current
2020-04-02
Tom Clegg
Kill other children and exit early if one child process...
blob
|
commitdiff
|
raw
|
diff to current
2020-04-02
Tom Clegg
Sort genome file same way as vcf regions.
blob
|
commitdiff
|
raw
|
diff to current
2020-03-12
Tom Clegg
s/python/python2/
blob
|
commitdiff
|
raw
|
diff to current
2020-03-12
Tom Clegg
Propagate genome arg.
blob
|
commitdiff
|
raw
|
diff to current
2020-03-11
Tom Clegg
Don't pipe gvcf_regions to bedtools. Avoid short-read...
blob
|
commitdiff
|
raw
|
diff to current
2020-03-11
Tom Clegg
Use named pipe for bcftools --mask data.
blob
|
commitdiff
|
raw
|
diff to current
2020-03-11
Tom Clegg
Connect stdin/stdout in docker containers.
blob
|
commitdiff
|
raw
|
diff to current
2020-03-11
Tom Clegg
No O_EXCL.
blob
|
commitdiff
|
raw
|
diff to current
2020-03-11
Tom Clegg
Error reporting.
blob
|
commitdiff
|
raw
|
diff to current
2020-03-10
Tom Clegg
Fix docker mounts.
blob
|
commitdiff
|
raw
|
diff to current
2020-03-10
Tom Clegg
Generate genome file from fasta.
blob
|
commitdiff
|
raw
|
diff to current
2020-03-10
Tom Clegg
Show stderr from children.
blob
|
commitdiff
|
raw
|
diff to current
2020-03-10
Tom Clegg
Don't try to pass fd 3 to docker.
blob
|
commitdiff
|
raw
|
diff to current
2020-03-10
Tom Clegg
vcf2fasta -mask cont'd.
blob
|
commitdiff
|
raw
|
diff to current
2020-03-10
Tom Clegg
Pass gvcf_regions.py via mount.
blob
|
commitdiff
|
raw
|
diff to current
2020-03-10
Tom Clegg
Container request priority flag.
blob
|
commitdiff
|
raw
|
diff to current
2020-03-09
Tom Clegg
Add vcf2fasta -mask option.
blob
|
commitdiff
|
raw
|
diff to current
2020-03-09
Tom Clegg
Add vcf2fasta command.
blob
|
commitdiff
|
raw
|
diff to current