Merge branch '19566-glm'
[lightning.git] / vcf2fasta.go
2022-01-17 Tom CleggUse native client to read annotations.csv.
2021-08-06 Tom CleggAdd copyright headers.
2021-02-08 Tom CleggMove command line tool to subdir.
2021-01-29 Tom CleggFake a complete_genomics_pass_all preset.
2020-12-02 Tom CleggDon't pass -gvcf-type="" to gvcf_regions.py.
2020-12-02 Tom CleggImprove import and vcf2fasta performance.
2020-11-25 Tom CleggUse smaller machines for small batches.
2020-11-25 Tom CleggUse buffered writer to avoid overwhelming arv-mount.
2020-11-24 Tom CleggConcurrent-batches mode for vcf2fasta and import.
2020-11-22 Tom CleggPass gvcf-type to gvcf_regions.
2020-04-03 Tom CleggRequest more memory when using mask.
2020-04-03 Tom CleggRead contig sizes from vcf.
2020-04-02 Tom CleggKill other children and exit early if one child process...
2020-04-02 Tom CleggSort genome file same way as vcf regions.
2020-03-12 Tom Cleggs/python/python2/
2020-03-12 Tom CleggPropagate genome arg.
2020-03-11 Tom CleggDon't pipe gvcf_regions to bedtools. Avoid short-read...
2020-03-11 Tom CleggUse named pipe for bcftools --mask data.
2020-03-11 Tom CleggConnect stdin/stdout in docker containers.
2020-03-11 Tom CleggNo O_EXCL.
2020-03-11 Tom CleggError reporting.
2020-03-10 Tom CleggFix docker mounts.
2020-03-10 Tom CleggGenerate genome file from fasta.
2020-03-10 Tom CleggShow stderr from children.
2020-03-10 Tom CleggDon't try to pass fd 3 to docker.
2020-03-10 Tom Cleggvcf2fasta -mask cont'd.
2020-03-10 Tom CleggPass gvcf_regions.py via mount.
2020-03-10 Tom CleggContainer request priority flag.
2020-03-09 Tom CleggAdd vcf2fasta -mask option.
2020-03-09 Tom CleggAdd vcf2fasta command.