cwl/lightning/lightning-tiling-stats.cwl

   1 # Copyright (C) The Lightning Authors. All rights reserved.
   2 #
   3 # SPDX-License-Identifier: AGPL-3.0
   4
   5 $namespaces:
   6   arv: "http://arvados.org/cwl#"
   7 cwlVersion: v1.2
   8 class: CommandLineTool
   9 requirements:
  10   NetworkAccess:
  11     networkAccess: true
  12 hints:
  13   DockerRequirement:
  14     dockerPull: lightning
  15   ResourceRequirement:
  16     coresMin: 2
  17     ramMin: 8000
  18   arv:RuntimeConstraints:
  19     keep_cache: 10000
  20     outputDirType: keep_output_dir
  21 inputs:
  22   libdir: Directory
  23 outputs:
  24   bed:
  25     type: File
  26     outputBinding:
  27       glob: "*bed"
  28 baseCommand: [lightning, tiling-stats]
  29 arguments:
  30   - "-local=true"
  31   - prefix: "-input-dir"
  32     valueFrom: $(inputs.libdir)
  33   - prefix: "-output-dir"
  34     valueFrom: $(runtime.outdir)