cwl/lightning/lightning-tiling-stats.cwl

   1 # Copyright (C) The Lightning Authors. All rights reserved.
   2 #
   3 # SPDX-License-Identifier: AGPL-3.0
   4
   5 $namespaces:
   6   arv: "http://arvados.org/cwl#"
   7 cwlVersion: v1.2
   8 class: CommandLineTool
   9 requirements:
  10   NetworkAccess:
  11     networkAccess: true
  12 hints:
  13   DockerRequirement:
  14     dockerPull: lightning
  15     arv:dockerCollectionPDH: 1f430e6dd9b6be0ae78d4cffde9b1fef+892
  16   ResourceRequirement:
  17     coresMin: 2
  18     ramMin: 8000
  19   arv:RuntimeConstraints:
  20     keep_cache: 10000
  21     outputDirType: keep_output_dir
  22 inputs:
  23   libdir: Directory
  24 outputs:
  25   bed:
  26     type: File
  27     outputBinding:
  28       glob: "*bed"
  29 baseCommand: [lightning, tiling-stats]
  30 arguments:
  31   - "-local=true"
  32   - prefix: "-input-dir"
  33     valueFrom: $(inputs.libdir)
  34   - prefix: "-output-dir"
  35     valueFrom: $(runtime.outdir)