arvados.git
2014-07-07 radhika2380: minor doc updates
2014-07-07 radhika2380: minor doc updates
2014-07-07 radhika2380: ssh to SSH where applicable
2014-07-07 radhikaMerge branch 'master' into 2380-ssh-doc
2014-07-07 Peter AmstutzDefault arvados-bcbio-nextgen pipeline to use freebayes...
2014-07-07 Peter Amstutzarvados-bcbio-nextgen writes output now. Put write_dir...
2014-07-07 Peter AmstutzBugfix os.environ() -> os.environ[] no issue #
2014-07-07 Peter AmstutzMerge branch 'bcbio-nextgen' refs #2991
2014-07-07 Peter AmstutzAdd -n cores to run bcbio in parallel on a multicore...
2014-07-07 Peter AmstutzAdd $(node.cores) substitution to run-program, and...
2014-07-07 Peter Amstutzrun-command retry after exception when writing output...
2014-07-07 Ward VandewegeDoc: fix link to pipeline instances page in workbench.
2014-07-04 Peter AmstutzMerge branch '3185-job-invalid-without-errors' refs...
2014-07-04 Tom Clegg3185: Fix job validation failure with no errors given.
2014-07-04 Peter AmstutzUpdate api server Gemfile dependency on arvados-cli...
2014-07-04 Peter AmstutzMerge branch '2991-job-docker-images' refs #2991
2014-07-04 Peter AmstutzMerge branch '2342-run-command-wrapper' refs #2342
2014-07-04 Ward VandewegeMerge branch '3141-keep-logging-improvements'
2014-07-04 Ward Vandewegekeep: MockVolume should return os.ErrNotExist instead...
2014-07-04 Ward VandewegeRevert "Do not print an error when hitting 'not found...
2014-07-04 Peter AmstutzUpdate api server Gemfile dependency on arvados-cli...
2014-07-04 Ward VandewegeMerge branch 'master' into 3141-keep-logging-improvements
2014-07-04 Peter AmstutzDon't send null job creation parameters in arv-run...
2014-07-04 Peter AmstutzDon't raise exception if filters parameter parses to
2014-07-04 Peter AmstutzDon't set "too long" flag on websocket test timer if...
2014-07-03 Peter AmstutzUpdate api server Gemfile dependency on arvados-cli...
2014-07-03 Peter AmstutzAdded note about how to build bcbio-nextgen docker...
2014-07-03 radhikarefs #3055
2014-07-03 radhikaMerge branch 'master' into 3055-advanced-tab-explanations
2014-07-03 radhikaMerge branch 'master' into 3055-advanced-tab-explanations
2014-07-03 Peter Amstutzjob create method parameters need to be converted to...
2014-07-03 Ward VandewegeDo not blow up trying to run a job if runtime_constrain...
2014-07-03 Ward VandewegeAdd some more detail to the docker installation page.
2014-07-03 Tom CleggMerge branch '3174-arv-ls-size-fencepost' closes #3174
2014-07-03 Tim PierceMerge branch '2873-permission-links-ownership'
2014-07-03 Tim PierceMerge branch '2985-shared-projects-descriptions'
2014-07-03 Peter AmstutzUpdate arvados-cli dependency of API server so crunch...
2014-07-03 Tom Clegg3174: Round up, not down, when reporting file sizes...
2014-07-03 Tom Clegg3174: Heed "common" section of config yaml the same...
2014-07-03 Peter AmstutzMerge remote-tracking branch 'origin/master' into job...
2014-07-03 Ward Vandewegedocker: mkimage-debootstrap.sh: wrap which calls that...
2014-07-03 Peter Amstutz"filters" is now propagated through from pipeline compo...
2014-07-03 Peter AmstutzDocker job's $HOME is now inside docker container,...
2014-07-03 Tim Pierce2873: more code review changes
2014-07-03 Peter Amstutzfix bwa_index
2014-07-02 Peter AmstutzBacked that out, make a symlink to tool-data instead
2014-07-02 Peter Amstutztool-data in work
2014-07-02 Peter Amstutzfix sub R1 R2
2014-07-02 Peter Amstutzrefer template directly
2014-07-02 Peter Amstutzwrite template
2014-07-02 Peter Amstutzopen for writing
2014-07-02 Peter Amstutzfix config copy
2014-07-02 Peter Amstutzfixed syntax error
2014-07-02 Peter AmstutzFixed +x
2014-07-02 Peter AmstutzFirst try at bcbio-nextgen script
2014-07-02 Tim Pierce2985: display project descriptions inline
2014-07-02 Peter AmstutzImprove output messages a bit
2014-07-02 Peter AmstutzDo not mount $TASK_WORK inside the container; scratch...
2014-07-02 Tim PierceMerge branch '3151-permission-ttl'
2014-07-02 Tim Pierce3151: use 2-week default permission TTL
2014-07-02 Peter AmstutzTypo fix ${HOME} -> $ENV{HOME}
2014-07-02 radhika3055: add explanation to the example commands in the...
2014-07-02 Peter AmstutzShould probably wait to install ruby before setting...
2014-07-02 radhikaMerge branch 'master' into 2380-ssh-doc
2014-07-02 Peter AmstutzUse separate $HOME for commands run outside the docker
2014-07-02 Peter AmstutzUse 'install' to create /keep, /tmp/crunch-src, /tmp...
2014-07-02 Ward VandewegeMerge branch '3118-docker-fixes'
2014-07-02 Ward VandewegeRemove superfluous cd commands
2014-07-02 Ward VandewegeFix up link in the docker alert box.
2014-07-02 Ward VandewegeThe linkchecker rake task should return with the exit...
2014-07-02 Ward VandewegeMerge branch '3118-docker-fixes'
2014-07-02 Ward VandewegeAdd state of the docker installation alert to the top...
2014-07-02 Ward VandewegeMerge branch 'master' into 3141-keep-logging-improvements
2014-07-02 Tim Pierce2873: changes for code review
2014-07-02 radhikaMerge branch 'master' into 2380-ssh-doc
2014-07-02 radhika2380: correct the section for setting the windoes path...
2014-07-02 Ward VandewegeDo not print an error when hitting 'not found' with...
2014-07-02 Ward VandewegeMove error logging for block-not-found from GetBlock...
2014-07-02 Ward VandewegeUnixVolume has no business being loud about files that...
2014-07-02 Peter AmstutzChange crunch-dispatch to use "git fetch-pack --all...
2014-07-02 Ward VandewegeAdd documentation to doc.arvados.org for the local...
2014-07-02 radhika2380: windows instuctions in a separate page
2014-07-02 radhika2380: separate windows env instructions into a separate...
2014-07-02 Peter AmstutzMerge branch 'master' into job-docker-images
2014-07-02 Peter AmstutzAdd explicit version constraint < 1.0.0 on 'jwt' gem...
2014-07-01 Peter AmstutzDockerfiles for java-bwa-samtools, bcbio-nextgen
2014-07-01 Ward VandewegeMerge branch '3118-docker-fixes'
2014-07-01 Ward VandewegeMerge branch 'master' into 3118-docker-fixes
2014-07-01 Ward VandewegeAdd documentation to doc.arvados.org for the local...
2014-07-01 Peter Amstutzfix find
2014-07-01 radhika2380: rearrange intro
2014-07-01 radhika2380: move ssh instructions for windows env into a...
2014-07-01 Peter AmstutzMore clever find
2014-07-01 Peter Amstutzmore status messages
2014-07-01 Peter AmstutzImprove error messages
2014-07-01 Peter AmstutzSet success/failed flag explicitly based on return...
2014-07-01 Peter AmstutzChange crunch-dispatch to use "git fetch-pack --all...
2014-07-01 Peter AmstutzMake sure set return code non-zero.
2014-07-01 Peter AmstutzAlways initialize arvados.api() so it doesn't silently...
2014-07-01 Peter AmstutzAdd dockerfile to build arvados/jobs-bwa-samtools image...
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