2013-03-20 |
Tom Clegg | improve error checking |
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2013-03-20 |
Tom Clegg | handle parameter types :object, :datetime, :text. refs... |
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2013-03-20 |
Ward Vandewege | Handle errors more gracefully. |
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2013-03-20 |
Ward Vandewege | Do not blow up when a default value for an argument... |
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2013-03-20 |
Ward Vandewege | Now make sure we are really using the new rest file... |
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2013-03-20 |
Tom Clegg | fix call to api_client.uuid when api_client is nil |
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2013-03-20 |
Ward Vandewege | Merge branch 'master' of git.clinicalfuture.com:orvos... |
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2013-03-20 |
Ward Vandewege | Move auto-generated REST discovery document to the... |
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2013-03-20 |
Tom Clegg | use new permission methods to check model transactions... |
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2013-03-20 |
Tom Clegg | add per-user and per-session default_owner. refs #1415 |
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2013-03-19 |
Tom Clegg | fix exception when tasks_summary[:running] == nil |
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2013-03-19 |
Tom Clegg | rename job steps to job tasks. refs #1416 |
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2013-03-19 |
Tom Clegg | rename job steps to job tasks. refs #1416 |
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2013-03-19 |
Tom Clegg | rename pipeline to pipeline template. refs #1416 |
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2013-03-19 |
Tom Clegg | rename pipeline to pipeline template. refs #1416 |
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2013-03-19 |
Tom Clegg | rename pipeline invocation to pipeline instance. refs... |
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2013-03-19 |
Tom Clegg | rename pipeline invocation to pipeline instance. refs... |
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2013-03-19 |
Tom Clegg | rename job command to script. refs #1416 |
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2013-03-19 |
Tom Clegg | fix cache keys |
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2013-03-19 |
Tom Clegg | rename job command to script. refs #1416 |
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2013-03-19 |
Ward Vandewege | Initial version of the cli client. |
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2013-03-19 |
Tom Clegg | generate discovery document at /orvos/v1/rest. refs... |
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2013-03-19 |
Tom Clegg | add group#index and group#show pages. refs #1415 |
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2013-03-18 |
Tom Clegg | add Job#show template. refs #1417 |
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2013-03-18 |
Tom Clegg | relocate permissions code, use resulting :read permissi... |
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2013-03-18 |
Tom Clegg | current_group_permissions, groups_i_can(:read). refs... |
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2013-03-18 |
Tom Clegg | show progress bar and tasks summary on /jobs page.... |
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2013-03-18 |
Ward Vandewege | maxResults is really called limit, update the discovery... |
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2013-03-18 |
Tom Clegg | add helpers: current_group_permissions, groups_i_can... |
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2013-03-18 |
Tom Clegg | clean up /jobs page. refs #1417 |
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2013-03-18 |
Tom Clegg | enable auto job links |
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2013-03-18 |
Tom Clegg | add /jobs page. refs #1417 |
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2013-03-18 |
Tom Clegg | Add Job#resource_limits to API response. refs #1417 |
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2013-03-18 |
Tom Clegg | record started_at, and command_version reported by... |
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2013-03-18 |
Tom Clegg | add output to Job api response. refs #1417 |
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2013-03-18 |
Tom Clegg | fix dispatch_jobs restart in 3260a10f0a9396b1ad0b8abe34... |
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2013-03-18 |
Tom Clegg | Fix slurm node counting, and pass along min_nodes to... |
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2013-03-18 |
Tom Clegg | Do not try to start a job when too few slurm nodes... |
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2013-03-18 |
Tom Clegg | add Jobs#resource_limits attribute. refs #1417 |
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2013-03-17 |
Tom Clegg | fix no-tasks-todo -> success logic |
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2013-03-17 |
Tom Clegg | restart dispatch_jobs service on deploy |
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2013-03-17 |
Tom Clegg | upcase job command parameters when passing to whjobmanager |
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2013-03-16 |
Tom Clegg | add script/dispatch_jobs.rb and related Job features |
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2013-03-13 |
Tom Clegg | rename Project to Group |
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2013-03-13 |
Tom Clegg | rename Project to Group |
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2013-03-13 |
Tom Clegg | refuse to change ec2_instance_id once an EC2 instance... |
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2013-03-13 |
Tom Clegg | use spot instances for compute nodes |
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2013-03-12 |
Tom Clegg | ignore Keep hints when verifying collection uuid =... |
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2013-03-05 |
Tom Clegg | prepare pipeline summary CSV and save in specimen-... |
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2013-03-04 |
Tom Clegg | add chromosome_calls and inferred_sex to factory job... |
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2013-03-04 |
Tom Clegg | add picard-casm statistics to factory job summary |
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2013-03-04 |
Tom Clegg | add fill_ftp_accounts script |
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2013-02-26 |
Ward Vandewege | Remove superfluous fields from the Link object. |
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2013-02-26 |
Tom Clegg | add a Link from specimen to collection when pipeline... |
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2013-02-26 |
Ward Vandewege | Weed out (most of) the unnecessary leftover bits in... |
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2013-02-26 |
Tom Clegg | add region_padding=10 |
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2013-02-25 |
Tom Clegg | add pipelines#show |
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2013-02-22 |
Tom Clegg | show "sinfo" results on /nodes page |
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2013-02-19 |
Tom Clegg | tweak factory_jobs display |
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2013-02-19 |
Tom Clegg | move vcf pipeline stats code to a helper, generate... |
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2013-02-18 |
Tom Clegg | add first,last,[] methods |
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2013-02-18 |
Tom Clegg | show raw components json on pipeline_invocations#show |
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2013-02-18 |
Tom Clegg | add PipelineInvocation#properties |
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2013-02-18 |
Tom Clegg | set exome regions |
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2013-02-17 |
Tom Clegg | Rearrange pipeline_invocation handling |
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2013-02-17 |
Tom Clegg | let pipeline_invocation#active be a regular attribute |
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2013-02-17 |
Tom Clegg | accept json-encoded pipeline[components] param |
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2013-02-12 |
Tom Clegg | do not delete uuid if provided in new object (notably... |
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2013-02-12 |
Tom Clegg | allow re-saving an existing collection without complaint |
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2013-02-12 |
Tom Clegg | fix broken orvos_model#initialize |
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2013-02-10 |
Tom Clegg | be more selective about invoking array-of-strings displ... |
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2013-02-10 |
Tom Clegg | emphasize local part of uuid |
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2013-02-10 |
Tom Clegg | render pipeline_invocation components as job/progress... |
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2013-02-10 |
Tom Clegg | check serialized attribute types during create/update |
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2013-02-09 |
Tom Clegg | set modified_by_user=nil instead of breaking if no... |
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2013-02-09 |
Tom Clegg | do not require user login for node#ping |
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2013-02-08 |
Tom Clegg | do not hyperlink collections that do not have correspon... |
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2013-02-08 |
Tom Clegg | use Enumerable and to_ary for implicit conversion to... |
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2013-02-07 |
Tom Clegg | use generic orvos link helper in collections#index |
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2013-02-07 |
Tom Clegg | sort lists on modified_at by default |
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2013-02-07 |
Tom Clegg | use old owner, not new owner, when checking permission... |
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2013-02-07 |
Tom Clegg | add links to generic specimen and project #show |
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2013-02-07 |
Tom Clegg | link to pipeline invocations from factory_jobs page |
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2013-02-07 |
Tom Clegg | fix double render |
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2013-02-07 |
Tom Clegg | fix misleading label |
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2013-02-07 |
Tom Clegg | make resource_class_for_uuid more convenient and robust |
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2013-02-07 |
Tom Clegg | add generic #show page for orvos objects and use it... |
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2013-02-07 |
Tom Clegg | show log#event_type |
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2013-02-07 |
Tom Clegg | update server-assigned attributes after saving objects |
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2013-02-07 |
Tom Clegg | add logs#show |
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2013-02-06 |
Tom Clegg | use JSON.dump so timestamps load back as Time, and... |
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2013-02-06 |
Tom Clegg | add orvos_resource_list#to_hash |
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2013-02-05 |
Tom Clegg | fix storage=cache pill coloron Source data tab |
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2013-02-05 |
Tom Clegg | add Files pane on Collections#show |
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2013-02-05 |
Tom Clegg | split jobs into provenance chart and job list |
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2013-02-05 |
Tom Clegg | abandon "bold megabytes" feature |
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2013-02-05 |
Tom Clegg | use real instead of test data size |
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2013-02-05 |
Tom Clegg | default to data page instead of factory_jobs |
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2013-02-05 |
Tom Clegg | obey eager() and limit() in all() |
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2013-02-05 |
Tom Clegg | limit 100 instead of 1000 |
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