set exome regions

diff --git a/app/helpers/vcf_pipeline_helper.rb b/app/helpers/vcf_pipeline_helper.rb
index 6a6640781e8bded0a55de0a5ae7cd80a4072447f..2f1536ee0f2a3c1a6c2379fd64b4d32965372fb3 100644 (file)
--- a/app/helpers/vcf_pipeline_helper.rb
+++ b/app/helpers/vcf_pipeline_helper.rb
@@ -6,6 +6,9 @@ module VcfPipelineHelper
       'GATK_TAR_BZ2' => '482ebab0408e173370c499f0b7c00878+93+K@van',
       'BWA' => '73be5598809c66f260fedd253c8608bd+67+K@van',
       'SAM' => '55d2115faa608eb95dab4f875b7511b1+72+K@van',
+      'REGIONS' => 'e52c086f41c2f089d88ec2bbd45355d3+87+K@van/SeqCap_EZ_Exome_v2.hg19.bed',
+      'STAND_CALL_CONF' => '4.0',
+      'STAND_EMIT_CONF' => '4.0',
       "bwa/INPUT" => input_manifest
     }
     pi.components = Pipeline.find(pi.pipeline_uuid).components