arvados.git
10 days ago21720: changed theme.sspacing.unit Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa... 21720-upgrade-mui
Lisa Knox [Fri, 26 Apr 2024 13:24:21 +0000 (09:24 -0400)]
21720: changed theme.sspacing.unit Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

11 days ago21720: upgraded react and react-dom to v17 Arvados-DCO-1.1-Signed-off-by: Lisa Knox...
Lisa Knox [Thu, 25 Apr 2024 18:20:24 +0000 (14:20 -0400)]
21720: upgraded react and react-dom to v17 Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

11 days agoMerge branch '21722-remove-chokidar' into main. Closes #21722
Stephen Smith [Thu, 25 Apr 2024 14:36:07 +0000 (10:36 -0400)]
Merge branch '21722-remove-chokidar' into main. Closes #21722

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

12 days agoMerge branch '21719-deps-security-updates'. Closes #21719
Lucas Di Pentima [Wed, 24 Apr 2024 18:46:43 +0000 (15:46 -0300)]
Merge branch '21719-deps-security-updates'. Closes #21719

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

12 days ago21719: Upgrades golang.org/x/net to 0.24.0 21719-deps-security-updates
Lucas Di Pentima [Wed, 24 Apr 2024 17:38:06 +0000 (14:38 -0300)]
21719: Upgrades golang.org/x/net to 0.24.0

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

12 days ago21722: Remove node-sass-chokidar to fix security issues 21722-remove-chokidar
Stephen Smith [Wed, 24 Apr 2024 15:22:55 +0000 (11:22 -0400)]
21722: Remove node-sass-chokidar to fix security issues

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

13 days agoMerge branch '21697-slow-client-blocking'
Tom Clegg [Tue, 23 Apr 2024 19:53:32 +0000 (15:53 -0400)]
Merge branch '21697-slow-client-blocking'

fixes #21697

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 days ago21697: Fix typo. 21697-slow-client-blocking
Tom Clegg [Tue, 23 Apr 2024 18:10:30 +0000 (14:10 -0400)]
21697: Fix typo.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 days ago21697: Comment why releaseSession func exists.
Tom Clegg [Tue, 23 Apr 2024 18:09:34 +0000 (14:09 -0400)]
21697: Comment why releaseSession func exists.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 days agoMerge branch '21696-slow-propfind'
Tom Clegg [Tue, 23 Apr 2024 15:36:26 +0000 (11:36 -0400)]
Merge branch '21696-slow-propfind'

fixes #21696

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

13 days ago21697: Don't hold session lock while processing read requests.
Tom Clegg [Tue, 23 Apr 2024 13:51:38 +0000 (09:51 -0400)]
21697: Don't hold session lock while processing read requests.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 weeks agoMerge branch '21037-upgrade-react-scripts'
Lisa Knox [Mon, 22 Apr 2024 18:36:10 +0000 (14:36 -0400)]
Merge branch '21037-upgrade-react-scripts'

closes #21307

Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

2 weeks ago21037: added eslintrc to gitignore Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa... 21037-upgrade-react-scripts
Lisa Knox [Mon, 22 Apr 2024 18:09:27 +0000 (14:09 -0400)]
21037: added eslintrc to gitignore Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

2 weeks ago21696: Comment optimized PortableDataHash func. 21696-slow-propfind
Tom Clegg [Sun, 21 Apr 2024 22:35:27 +0000 (18:35 -0400)]
21696: Comment optimized PortableDataHash func.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 weeks ago21696: Update test case & timing results for ill-packed manifests.
Tom Clegg [Sun, 21 Apr 2024 22:16:45 +0000 (18:16 -0400)]
21696: Update test case & timing results for ill-packed manifests.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 weeks ago21696: Cache subpath->fnode lookups.
Tom Clegg [Sun, 21 Apr 2024 22:09:22 +0000 (18:09 -0400)]
21696: Cache subpath->fnode lookups.

Avoids extra locks/lookups when loading non-contiguous chunks.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 weeks ago21696: Speed up PortableDataHash by not using regexp.
Tom Clegg [Sun, 21 Apr 2024 22:08:48 +0000 (18:08 -0400)]
21696: Speed up PortableDataHash by not using regexp.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 weeks ago21696: Add test for non-contiguous file data segments.
Tom Clegg [Sat, 20 Apr 2024 17:50:45 +0000 (13:50 -0400)]
21696: Add test for non-contiguous file data segments.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 weeks ago21696: Fix slow loading of non-contiguous file data segments.
Tom Clegg [Sat, 20 Apr 2024 17:03:17 +0000 (13:03 -0400)]
21696: Fix slow loading of non-contiguous file data segments.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 weeks agoMerge branch '21606-keep-web-output-buffer'
Tom Clegg [Fri, 19 Apr 2024 18:11:30 +0000 (14:11 -0400)]
Merge branch '21606-keep-web-output-buffer'

closes #21606

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 weeks agoMerge branch '21383-salt-debian12'
Brett Smith [Fri, 19 Apr 2024 18:08:11 +0000 (14:08 -0400)]
Merge branch '21383-salt-debian12'

Closes #21524, #21583, #21661.
Refs #21383.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

2 weeks ago21606: Document units for WebDAVOutputBuffer config. 21606-keep-web-output-buffer
Tom Clegg [Fri, 19 Apr 2024 18:07:16 +0000 (14:07 -0400)]
21606: Document units for WebDAVOutputBuffer config.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 weeks ago21037: moved entire beforeall into beforeeach in auto-logaout spec Arvados-DCO-1...
Lisa Knox [Fri, 19 Apr 2024 14:55:27 +0000 (10:55 -0400)]
21037: moved entire beforeall into beforeeach in auto-logaout spec Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

2 weeks ago21037: fixed timers in auto-logout spec Arvados-DCO-1.1-Signed-off-by: Lisa Knox...
Lisa Knox [Fri, 19 Apr 2024 14:48:28 +0000 (10:48 -0400)]
21037: fixed timers in auto-logout spec Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

2 weeks ago21037: fixed search-input spec Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox...
Lisa Knox [Fri, 19 Apr 2024 14:46:47 +0000 (10:46 -0400)]
21037: fixed search-input spec Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

2 weeks ago21037: removed stray whitespace in xml example Arvados-DCO-1.1-Signed-off-by: Lisa...
Lisa Knox [Fri, 19 Apr 2024 13:45:03 +0000 (09:45 -0400)]
21037: removed stray whitespace in xml example Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

2 weeks ago21037: fixed auth-middleware test Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa...
Lisa Knox [Fri, 19 Apr 2024 13:28:07 +0000 (09:28 -0400)]
21037: fixed auth-middleware test Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

2 weeks agoRevert "21037: changed jest timer mocks to settimeouts Arvados-DCO-1.1-Signed-off...
Lisa Knox [Thu, 18 Apr 2024 18:29:24 +0000 (14:29 -0400)]
Revert "21037: changed jest timer mocks to settimeouts Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>"

Reverting due to false positives in search-input spec

This reverts commit 515f96c411358b45a978b6b7c93da860b09ee7d0.

Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

2 weeks ago21254: Add workaround for Bundler zlib bug 21383-salt-debian12
Brett Smith [Thu, 18 Apr 2024 15:11:31 +0000 (11:11 -0400)]
21254: Add workaround for Bundler zlib bug

See comments for discussion.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

2 weeks ago21383: Salt provisioner installs systemd-cron
Brett Smith [Thu, 7 Mar 2024 19:36:01 +0000 (14:36 -0500)]
21383: Salt provisioner installs systemd-cron

See comments for rationale.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

2 weeks ago21383: Reconfigure Salt logrotate service
Brett Smith [Wed, 6 Mar 2024 14:31:25 +0000 (09:31 -0500)]
21383: Reconfigure Salt logrotate service

See comments for rationale.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

2 weeks ago21383: Remove docker-ce version pin
Brett Smith [Tue, 5 Mar 2024 19:17:15 +0000 (14:17 -0500)]
21383: Remove docker-ce version pin

Now that we've removed support for older distros, all the distros we
currently support have the minimum version of docker-ce
available. Meanwhile, that older version is not available for some newer
distros we want to support. Remove the pin accordingly.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

2 weeks ago21383: Standardize on os-release variables
Brett Smith [Tue, 5 Mar 2024 19:16:06 +0000 (14:16 -0500)]
21383: Standardize on os-release variables

This script was getting this information three different ways: by
reading /etc/os-release, calling lsb_release, and using its own internal
lookup tables. This is silly. Just read /etc/os-release and use those
variables throughout.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

2 weeks ago21383: Update Salt installer formulas
Brett Smith [Tue, 16 Jan 2024 14:17:04 +0000 (09:17 -0500)]
21383: Update Salt installer formulas

I'm not aware of any specific reason we need this, but it's good
maintenance since I'm in here anyway.

letsencrypt 3.0.0 does introduce a backwards incompatible change because
it no longer installs the Apache plugin by default. Since we never
wanted that plugin and always specify the pkgs we want anyway, this
shouldn't affect us.
https://github.com/saltstack-formulas/letsencrypt-formula/blob/master/CHANGELOG.md#300-2021-07-02

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

2 weeks ago21383: Use postgres formula with support for Debian 12
Brett Smith [Mon, 15 Jan 2024 20:29:34 +0000 (15:29 -0500)]
21383: Use postgres formula with support for Debian 12

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

2 weeks ago21383: Upgrade Salt installer to Salt 3006
Brett Smith [Mon, 15 Jan 2024 18:39:34 +0000 (13:39 -0500)]
21383: Upgrade Salt installer to Salt 3006

Salt 3006 is the first version to support Python 3.11, included with
Debian 12.

Because 3006 is the current stable, we have to update the bootstrap
invocation to match. I guess we'll have to make another change after it
becomes old-stable.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

2 weeks ago21583: Configure Passenger with passenger_preload_bundler
Brett Smith [Fri, 5 Apr 2024 19:06:12 +0000 (15:06 -0400)]
21583: Configure Passenger with passenger_preload_bundler

This helps avoid situations where Passenger loads gems that create
a conflict with our bundle. We're currently seeing this with the base64
gem, where Passenger on Ruby 3.[0-3] can load the version shipped with
that Ruby before our RailsAPI bundle gets loaded. This causes an error:

  [ E 2024-03-12 15:12:44.8347 907382/Tf age/Cor/App/Implementation.cpp:221 ]:
  Could not spawn process for application /var/www/arvados-api/current:
  The application encountered the following error: You have already
  activated base64 0.1.1, but your Gemfile requires base64 0.2.0. Since
  base64 is a default gem, you can either remove your dependency on it or
  try updating to a newer version of bundler that supports base64 as a
  default gem. (Gem::LoadError)

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

2 weeks ago21583: Update link for Phusion Passenger install guide
Brett Smith [Fri, 5 Apr 2024 19:00:54 +0000 (15:00 -0400)]
21583: Update link for Phusion Passenger install guide

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

2 weeks ago21037: changed jest timer mocks to settimeouts Arvados-DCO-1.1-Signed-off-by: Lisa...
Lisa Knox [Wed, 17 Apr 2024 18:24:31 +0000 (14:24 -0400)]
21037: changed jest timer mocks to settimeouts Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

2 weeks agoMerge branch '21644-flaky-test'
Tom Clegg [Wed, 17 Apr 2024 15:37:11 +0000 (11:37 -0400)]
Merge branch '21644-flaky-test'

fixes #21644

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 weeks ago21696: Fix unnecessary copy-by-value.
Tom Clegg [Tue, 16 Apr 2024 18:18:03 +0000 (14:18 -0400)]
21696: Fix unnecessary copy-by-value.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 weeks ago21696: Exercise less efficient code path by mixing up block order.
Tom Clegg [Tue, 16 Apr 2024 18:07:43 +0000 (14:07 -0400)]
21696: Exercise less efficient code path by mixing up block order.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 weeks agoMerge branch '21692-go-packages-no-build-id'
Brett Smith [Tue, 16 Apr 2024 15:12:47 +0000 (11:12 -0400)]
Merge branch '21692-go-packages-no-build-id'

Refs #21692. Closes #21694.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

2 weeks ago21037: removed jszip mock in spec Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa...
Lisa Knox [Tue, 16 Apr 2024 14:31:50 +0000 (10:31 -0400)]
21037: removed jszip mock in spec Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

3 weeks ago21037: fixed sharingdialog import in spec Arvados-DCO-1.1-Signed-off-by: Lisa Knox...
Lisa Knox [Mon, 15 Apr 2024 15:34:46 +0000 (11:34 -0400)]
21037: fixed sharingdialog import in spec Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

3 weeks ago21696: Add "large collection" test with large files.
Tom Clegg [Mon, 15 Apr 2024 14:15:57 +0000 (10:15 -0400)]
21696: Add "large collection" test with large files.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 weeks ago21037: renamed a few "require" functions to adapt to webpack now reserving that word...
Lisa Knox [Mon, 15 Apr 2024 13:23:31 +0000 (09:23 -0400)]
21037: renamed a few "require" functions to adapt to webpack now reserving that word Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

3 weeks ago21692: Test RPM packages for build id conflicts 21692-go-packages-no-build-id
Brett Smith [Fri, 12 Apr 2024 18:56:45 +0000 (14:56 -0400)]
21692: Test RPM packages for build id conflicts

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

3 weeks ago21692: Don't include build id links in Go packages
Brett Smith [Fri, 12 Apr 2024 18:21:20 +0000 (14:21 -0400)]
21692: Don't include build id links in Go packages

See comment for rationale.

Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>

3 weeks ago21644: Fix unreliable test. 21644-flaky-test
Tom Clegg [Fri, 12 Apr 2024 18:52:07 +0000 (14:52 -0400)]
21644: Fix unreliable test.

Test the bucket that doesn't depend on actual test speed.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 weeks ago21037: fixed all linter warnings Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox...
Lisa Knox [Fri, 12 Apr 2024 18:11:20 +0000 (14:11 -0400)]
21037: fixed all linter warnings Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

3 weeks ago21037: added eslintcache to gitignore Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa...
Lisa Knox [Fri, 12 Apr 2024 17:59:58 +0000 (13:59 -0400)]
21037: added eslintcache to gitignore Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

3 weeks ago21037: added eslintcache to gitignore Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa...
Lisa Knox [Fri, 12 Apr 2024 17:55:59 +0000 (13:55 -0400)]
21037: added eslintcache to gitignore Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

3 weeks ago21037: fixed most of the linter warnings Arvados-DCO-1.1-Signed-off-by: Lisa Knox...
Lisa Knox [Fri, 12 Apr 2024 17:54:17 +0000 (13:54 -0400)]
21037: fixed most of the linter warnings Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

3 weeks ago21037: app compiles Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>
Lisa Knox [Fri, 12 Apr 2024 15:52:27 +0000 (11:52 -0400)]
21037: app compiles Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

3 weeks agoMerge branch '21691-wb2-dependency-upgrades' into main. Closes #21691
Stephen Smith [Fri, 12 Apr 2024 14:50:31 +0000 (10:50 -0400)]
Merge branch '21691-wb2-dependency-upgrades' into main. Closes #21691

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

3 weeks agoMerge branch '21688-io-panel-style-fixes' into main. Closes #21688
Stephen Smith [Fri, 12 Apr 2024 13:22:25 +0000 (09:22 -0400)]
Merge branch '21688-io-panel-style-fixes' into main. Closes #21688

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

3 weeks ago21691: Update tar to 6.2.1 21691-wb2-dependency-upgrades
Stephen Smith [Fri, 12 Apr 2024 13:10:04 +0000 (09:10 -0400)]
21691: Update tar to 6.2.1

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

3 weeks ago21691: Add minor improvements to test reliability
Stephen Smith [Fri, 12 Apr 2024 00:30:42 +0000 (20:30 -0400)]
21691: Add minor improvements to test reliability

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

3 weeks ago21691: Add types to replace files methods for differing parameter/result types
Stephen Smith [Fri, 12 Apr 2024 00:29:04 +0000 (20:29 -0400)]
21691: Add types to replace files methods for differing parameter/result types

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

3 weeks ago21691: Add type to login method to satisfy result type
Stephen Smith [Fri, 12 Apr 2024 00:27:50 +0000 (20:27 -0400)]
21691: Add type to login method to satisfy result type

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

3 weeks ago21691: Avoid error by changing method of clearing token
Stephen Smith [Fri, 12 Apr 2024 00:27:01 +0000 (20:27 -0400)]
21691: Avoid error by changing method of clearing token

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

3 weeks ago21691: Update axios to 0.28.1
Stephen Smith [Fri, 12 Apr 2024 00:26:15 +0000 (20:26 -0400)]
21691: Update axios to 0.28.1

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

3 weeks ago21606: Change default output buffer size to 0.
Tom Clegg [Thu, 28 Mar 2024 14:40:12 +0000 (10:40 -0400)]
21606: Change default output buffer size to 0.

See https://dev.arvados.org/issues/21606#note-8.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 weeks ago21606: Improve code comments.
Tom Clegg [Thu, 28 Mar 2024 14:39:34 +0000 (10:39 -0400)]
21606: Improve code comments.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 weeks ago21606: Update config comment.
Tom Clegg [Thu, 21 Mar 2024 15:01:46 +0000 (11:01 -0400)]
21606: Update config comment.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 weeks ago21606: Add output buffer for webdav downloads.
Tom Clegg [Tue, 19 Mar 2024 19:37:32 +0000 (15:37 -0400)]
21606: Add output buffer for webdav downloads.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 weeks agoMerge branch '21657-diag-docker-format'
Tom Clegg [Thu, 11 Apr 2024 19:01:22 +0000 (15:01 -0400)]
Merge branch '21657-diag-docker-format'

fixes #21657

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 weeks agoMerge branch '21659-gh-workflow-tests' into main. Closes #21659
Stephen Smith [Thu, 11 Apr 2024 17:57:26 +0000 (13:57 -0400)]
Merge branch '21659-gh-workflow-tests' into main. Closes #21659

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

3 weeks ago21688: Move json out of tableWrapper and add flexbox stretch to collection tab 21688-io-panel-style-fixes
Stephen Smith [Thu, 11 Apr 2024 17:48:50 +0000 (13:48 -0400)]
21688: Move json out of tableWrapper and add flexbox stretch to collection tab

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

3 weeks agoMerge branch '21654-net-imap-downgrade'. Refs #21654
Lucas Di Pentima [Thu, 11 Apr 2024 15:17:08 +0000 (12:17 -0300)]
Merge branch '21654-net-imap-downgrade'. Refs #21654

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 weeks ago21654: Reverts net-imap to a previous version to keep ruby compatibility. 21654-net-imap-downgrade
Lucas Di Pentima [Thu, 11 Apr 2024 14:42:28 +0000 (11:42 -0300)]
21654: Reverts net-imap to a previous version to keep ruby compatibility.

Bundler upgraded this gem when upgrading rails to 7.0.8.1, making it
incompatible with ruby 2.7.2, but rails doesn't explicitly asks a new
net-imap version.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 weeks ago21657: Update docker archive ID introspection code for OCIv2. 21657-diag-docker-format
Tom Clegg [Thu, 11 Apr 2024 14:35:17 +0000 (10:35 -0400)]
21657: Update docker archive ID introspection code for OCIv2.

Also, when not using the built-in image, we already rely on having
docker tools available, so use `docker inspect` instead of trying to
read the tarball.

This way the introspection code now only needs to work on the built-in
image.  And now there's a test for that.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

3 weeks agoReverts nokogiri upgrade to a ruby-2.7 supported version.
Lucas Di Pentima [Thu, 11 Apr 2024 13:52:43 +0000 (10:52 -0300)]
Reverts nokogiri upgrade to a ruby-2.7 supported version.

Refs #21654

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 weeks agoMerge branch '21313-share-dialog-warning'
Lisa Knox [Wed, 10 Apr 2024 18:52:16 +0000 (14:52 -0400)]
Merge branch '21313-share-dialog-warning'

closes #21313

Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

3 weeks ago21313: aligned share button styles with edit button styles Arvados-DCO-1.1-Signed... 21313-share-dialog-warning
Lisa Knox [Wed, 10 Apr 2024 14:27:17 +0000 (10:27 -0400)]
21313: aligned share button styles with edit button styles Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

3 weeks ago21313: removed vestigial saveEnabled prop Arvados-DCO-1.1-Signed-off-by: Lisa Knox...
Lisa Knox [Wed, 10 Apr 2024 14:18:53 +0000 (10:18 -0400)]
21313: removed vestigial saveEnabled prop Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

3 weeks agoMerge branch '21654-wb2-deps-upgrades'. Refs #21654
Lucas Di Pentima [Tue, 9 Apr 2024 21:40:28 +0000 (18:40 -0300)]
Merge branch '21654-wb2-deps-upgrades'. Refs #21654

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 weeks agoMerge branch '21639-prefetch' refs #21639
Peter Amstutz [Tue, 9 Apr 2024 19:30:15 +0000 (15:30 -0400)]
Merge branch '21639-prefetch' refs #21639

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

3 weeks ago21313: moved items so that all rows align properly Arvados-DCO-1.1-Signed-off-by...
Lisa Knox [Tue, 9 Apr 2024 18:35:24 +0000 (14:35 -0400)]
21313: moved items so that all rows align properly Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

3 weeks ago21313: moved data-cy to new button Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa...
Lisa Knox [Tue, 9 Apr 2024 17:37:29 +0000 (13:37 -0400)]
21313: moved data-cy to new button Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

3 weeks ago21313: removed underline from permissions select Arvados-DCO-1.1-Signed-off-by: Lisa...
Lisa Knox [Tue, 9 Apr 2024 17:10:27 +0000 (13:10 -0400)]
21313: removed underline from permissions select Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

3 weeks agoMerge branch '21654-protobuf-upgrade'. Refs #21654
Lucas Di Pentima [Tue, 9 Apr 2024 16:08:12 +0000 (13:08 -0300)]
Merge branch '21654-protobuf-upgrade'. Refs #21654

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 weeks agoMerge branch '21654-docker-upgrade'. Refs #21654
Lucas Di Pentima [Tue, 9 Apr 2024 15:31:21 +0000 (12:31 -0300)]
Merge branch '21654-docker-upgrade'. Refs #21654

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 weeks ago21654: Upgrades ex5-ext to address CVE-2024-27088 21654-wb2-deps-upgrades
Lucas Di Pentima [Tue, 9 Apr 2024 15:21:50 +0000 (12:21 -0300)]
21654: Upgrades ex5-ext to address CVE-2024-27088

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 weeks agoMerge branch '21654-express-upgrade'. Refs #21654
Lucas Di Pentima [Tue, 9 Apr 2024 15:18:10 +0000 (12:18 -0300)]
Merge branch '21654-express-upgrade'. Refs #21654

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 weeks ago21654: Upgrades ip packages to address CVE-2023-42282.
Lucas Di Pentima [Tue, 9 Apr 2024 15:17:17 +0000 (12:17 -0300)]
21654: Upgrades ip packages to address CVE-2023-42282.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 weeks agoMerge branch '21654-follow-redirects-upgrade'. Refs #21654
Lucas Di Pentima [Tue, 9 Apr 2024 15:08:03 +0000 (12:08 -0300)]
Merge branch '21654-follow-redirects-upgrade'. Refs #21654

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 weeks ago21654: Upgrades github.com/docker/docker to address CVE-2024-24557 21654-docker-upgrade
Lucas Di Pentima [Tue, 9 Apr 2024 14:57:24 +0000 (11:57 -0300)]
21654: Upgrades github.com/docker/docker to address CVE-2024-24557

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 weeks ago21654: Upgrades google.golang.org/protobuf to address CVE-2024-24786 21654-protobuf-upgrade
Lucas Di Pentima [Tue, 9 Apr 2024 14:51:19 +0000 (11:51 -0300)]
21654: Upgrades google.golang.org/protobuf to address CVE-2024-24786

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 weeks ago21313: moved save button to bottom of share dialog Arvados-DCO-1.1-Signed-off-by...
Lisa Knox [Tue, 9 Apr 2024 14:47:55 +0000 (10:47 -0400)]
21313: moved save button to bottom of share dialog Arvados-DCO-1.1-Signed-off-by: Lisa Knox <lisa.knox@curii.com>

3 weeks agoMerge branch '21654-rails-upgrade'. Refs #21654
Lucas Di Pentima [Tue, 9 Apr 2024 14:45:23 +0000 (11:45 -0300)]
Merge branch '21654-rails-upgrade'. Refs #21654

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 weeks ago21654: Upgrades follow-redirects addressing CVE-2024-28849 & CVE-2023-26159 21654-follow-redirects-upgrade
Lucas Di Pentima [Tue, 9 Apr 2024 14:41:40 +0000 (11:41 -0300)]
21654: Upgrades follow-redirects addressing CVE-2024-28849 & CVE-2023-26159

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 weeks ago21654: Upgrades express to address CVE-2024-29041 21654-express-upgrade
Lucas Di Pentima [Tue, 9 Apr 2024 14:24:01 +0000 (11:24 -0300)]
21654: Upgrades express to address CVE-2024-29041

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 weeks ago21654: Upgrades rails to 7.0.8.1 to address CVE-2024-26143 21654-rails-upgrade
Lucas Di Pentima [Tue, 9 Apr 2024 14:15:45 +0000 (11:15 -0300)]
21654: Upgrades rails to 7.0.8.1 to address CVE-2024-26143

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 weeks ago21654: Upgrades rack to address several vulnerabilities.
Lucas Di Pentima [Tue, 9 Apr 2024 14:12:01 +0000 (11:12 -0300)]
21654: Upgrades rack to address several vulnerabilities.

* CVE-2024-26141
* CVE-2024-26146
* CVE-2024-25126

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 weeks agoMerge branch '21654-go-jose-upgrade'. Refs #21654
Lucas Di Pentima [Tue, 9 Apr 2024 14:08:58 +0000 (11:08 -0300)]
Merge branch '21654-go-jose-upgrade'. Refs #21654

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 weeks ago21654: Upgrades github.com/go-jose/go-jose/v3 to address CVE-2024-28180 21654-go-jose-upgrade
Lucas Di Pentima [Tue, 9 Apr 2024 13:37:20 +0000 (10:37 -0300)]
21654: Upgrades github.com/go-jose/go-jose/v3 to address CVE-2024-28180

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 weeks agoMerge branch '21654-browserify-sign-upgrade'. Refs #21654
Lucas Di Pentima [Tue, 9 Apr 2024 13:29:26 +0000 (10:29 -0300)]
Merge branch '21654-browserify-sign-upgrade'. Refs #21654

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

3 weeks agoMerge branch '21654-nokogiri-upgrade'. Refs #21654
Lucas Di Pentima [Tue, 9 Apr 2024 13:28:38 +0000 (10:28 -0300)]
Merge branch '21654-nokogiri-upgrade'. Refs #21654

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>