Brett Smith [Fri, 29 Sep 2023 02:04:46 +0000 (22:04 -0400)]
19818: Document arvados.api module
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Fri, 29 Sep 2023 01:35:38 +0000 (21:35 -0400)]
19818: Deprecate arvados.api.OrderedJsonModel
Python dictionaries started preserving insertion order in CPython 3.6,
and that became a specified feature of the language in Python 3.7. That
means the default model has the same behavior as OrderedJsonModel on
every platform supported by Arvados. Deprecate the class accordingly.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Thu, 28 Sep 2023 23:56:43 +0000 (19:56 -0400)]
Merge branch '20885-pdoc-style'
Closes #20885.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Mon, 25 Sep 2023 20:26:46 +0000 (16:26 -0400)]
20885: Update PySDK docstrings after pdoc migration
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Mon, 25 Sep 2023 21:31:24 +0000 (17:31 -0400)]
20885: Add our own pdoc wrapper
Mainly to support admonitions. See the documentation and comments in
pysdk_pdoc.py for details.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Mon, 25 Sep 2023 20:40:56 +0000 (16:40 -0400)]
20885: Clean up run-tests Python install env
Most of this code duplicates sdk/python/setup.py and should no longer be
necessary with modern pip. Invoking pip so often also makes it slower
than it needs to be.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Tom Clegg [Mon, 25 Sep 2023 18:17:41 +0000 (14:17 -0400)]
Merge branch '20862-google-api-client'
fixes #20862
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Mon, 25 Sep 2023 18:14:37 +0000 (14:14 -0400)]
20862: Update docs on google-api-client fork.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Mon, 25 Sep 2023 15:56:48 +0000 (11:56 -0400)]
20862: Emit notice about skipping sdk/ruby-google-api-client tests.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Mon, 25 Sep 2023 15:46:36 +0000 (11:46 -0400)]
20862: Merge branch 'main' into 20862-google-api-client
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Peter Amstutz [Thu, 21 Sep 2023 13:14:54 +0000 (09:14 -0400)]
Fix 2.7.0 date in upgrading notes, refs #20769
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 20 Sep 2023 21:15:20 +0000 (17:15 -0400)]
Need to have nvidia installed so singularity detects it
refs #20769
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 20 Sep 2023 21:08:10 +0000 (17:08 -0400)]
Check out singularity from git to get submodules
refs #20769
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 20 Sep 2023 20:56:15 +0000 (16:56 -0400)]
Add singularity build deps libglib2.0-dev and libseccomp-dev to packer
refs #20769
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 20 Sep 2023 17:23:22 +0000 (13:23 -0400)]
Set 2.7.0 release date, refs #20769
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 19 Sep 2023 21:24:47 +0000 (17:24 -0400)]
Fix cwltest version pin, refs #20973
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 18 Sep 2023 15:29:27 +0000 (11:29 -0400)]
Merge branch '20973-cwltest' refs #20973
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Brett Smith [Mon, 18 Sep 2023 14:45:02 +0000 (10:45 -0400)]
Merge branch '20497-updating-wgs-tutorial'
Closes #20497.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Mon, 18 Sep 2023 14:44:04 +0000 (10:44 -0400)]
20497: Typo fixes
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Mon, 18 Sep 2023 14:35:42 +0000 (10:35 -0400)]
20497: Give brief instructions for reviewing subprocess output
This was previously discussed in the same paragraph as the main workflow
download collection. Moving it here means we don't jump back and forth
as much between the main workflow process and a subprocess.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Mon, 18 Sep 2023 13:37:52 +0000 (09:37 -0400)]
20497: Clarify collection view/download
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Mon, 18 Sep 2023 13:34:55 +0000 (09:34 -0400)]
20497: Clean up section 5 opening paragraph
There used to be multiple navigation options listed here. Now that
there's only one, the introduction needs to be updated to match.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Peter Amstutz [Mon, 18 Sep 2023 13:32:11 +0000 (09:32 -0400)]
Pin cwltest version that we package, refs #20973
The subsequent release of cwltest confirms that files exist on disk,
since our files are in Keep, all the tests fail. We should add
[optional] Arvados support to cwltest so it can access Keep but for
the time being just package the last working version.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Brett Smith [Mon, 18 Sep 2023 13:31:14 +0000 (09:31 -0400)]
20497: Direct the reader to the tutorial project via Public Favorites
Unfortunately searching for the project raises a couple of issues:
* The search results return two copies of the project, one from pirca
and one from jutro. If the reader picks the jutro one, they'll be
prompted to log in again, losing their progress and kicking them off the
happy path.
* The search results also return the finished demo workflow process we
publish for people, "(start here) Example WGS processing workflow". This
is attractive to people because it says "(start here)", has a bright
green "Completed" badge next to it, and the difference between a process
and a project may not be clear to people who are just getting started
with Arvados.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Mon, 18 Sep 2023 13:29:24 +0000 (09:29 -0400)]
20497: Add missing paragraph break
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Mon, 18 Sep 2023 13:28:20 +0000 (09:28 -0400)]
20497: Make button text consistent with Workbench 2 UI
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Peter Amstutz [Mon, 18 Sep 2023 13:21:13 +0000 (09:21 -0400)]
Merge branch '20955-log-update-doc' refs #20955
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Brett Smith [Mon, 18 Sep 2023 02:47:57 +0000 (22:47 -0400)]
20955: Typo fixes throughout
* "superceded"→"superseded"
* "via[d] the" repetition
* "database" echoed twice in one sentence
* Link hardcoded to doc.arvados.org→site.baseurl
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Peter Amstutz [Fri, 15 Sep 2023 20:47:12 +0000 (16:47 -0400)]
20955: Update documentation about the new and legacy container logging systems
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Fri, 15 Sep 2023 17:47:51 +0000 (13:47 -0400)]
20955: Reorder upgrade notes in rough order of disruptiveness
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Fri, 15 Sep 2023 15:11:07 +0000 (11:11 -0400)]
Add note about api_client_authorization deprecated fields refs #20951
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Lucas Di Pentima [Thu, 14 Sep 2023 21:04:06 +0000 (18:04 -0300)]
Merge branch '20926-installer-pg-client-version'. Closes #20926
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Lucas Di Pentima [Thu, 14 Sep 2023 21:02:44 +0000 (18:02 -0300)]
20926: Makes regex for postgres.client state more strict.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Brett Smith [Thu, 14 Sep 2023 16:00:42 +0000 (12:00 -0400)]
Merge branch '20932-wb2-docs'
Closes #20932.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Lucas Di Pentima [Thu, 14 Sep 2023 14:46:30 +0000 (11:46 -0300)]
20926: Sets default PG version when when using single host deployment.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Lucas Di Pentima [Thu, 14 Sep 2023 14:23:00 +0000 (11:23 -0300)]
20926: Sets PostgreSQL v15 the default version.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Lucas Di Pentima [Wed, 13 Sep 2023 22:27:13 +0000 (19:27 -0300)]
20926: Requires manually setting PG version when not using the 'database' role.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Tom Clegg [Wed, 13 Sep 2023 19:53:59 +0000 (15:53 -0400)]
Merge branch '20930-websocket'
fixes #20930
fixes #20507
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Peter Amstutz [Wed, 13 Sep 2023 19:28:12 +0000 (15:28 -0400)]
Merge branch '20850-wb1-deprecated' refs #20850
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 13 Sep 2023 19:26:28 +0000 (15:26 -0400)]
20850: Fix capitalization and indentation
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Brett Smith [Wed, 13 Sep 2023 18:29:43 +0000 (14:29 -0400)]
20932: Update un/trash instructions for Workbench 2
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Wed, 13 Sep 2023 18:16:19 +0000 (14:16 -0400)]
20932/20850/20890: Remove switch instructions from Workbench migration guide
The switch feature has been removed from Workbench 2, and a deprecation
notice in Workbench 1 now prominently leads you to switch. See #20890
and #20850, respectively.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Alex Coleman [Wed, 13 Sep 2023 04:24:09 +0000 (22:24 -0600)]
20497: Updating documentation
Updating screenshots, adding additional screenshot, rewording several sections, and adding more relevant
information for Workbench2.
Arvados-DCO-1.1-Signed-off-by: Alex Coleman <alex.coleman@curii.com>
Lucas Di Pentima [Tue, 12 Sep 2023 22:35:36 +0000 (19:35 -0300)]
20926: Allows the database version to be configurable from local.params.
Also, installs postgresql-client on the controller nodes from the salt
formula, so that its version matches the configured value.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Brett Smith [Tue, 12 Sep 2023 21:53:32 +0000 (17:53 -0400)]
20840: Typo fixes.
Refs #20840.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Tom Clegg [Tue, 12 Sep 2023 17:52:24 +0000 (13:52 -0400)]
Fix flaky dispatchcloud test.
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Peter Amstutz [Tue, 12 Sep 2023 15:46:54 +0000 (11:46 -0400)]
Merge branch '20840-api-deprecate-notice' refs #20840
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Tue, 12 Sep 2023 13:49:35 +0000 (09:49 -0400)]
20930: Fix deadlock in notify/listen event loop.
See TestManyEventsAndSubscribers comment in previous commit.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Sun, 10 Sep 2023 02:01:22 +0000 (22:01 -0400)]
20930: Test many clients connecting and disonnecting.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Sun, 10 Sep 2023 02:02:29 +0000 (22:02 -0400)]
20930: Concurrency optimization.
In handler, create the eventSink later, and call Stop() sooner, to
avoid needlessly blocking other sinks during other setup/teardown.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Lucas Di Pentima [Fri, 8 Sep 2023 21:00:19 +0000 (18:00 -0300)]
Merge branch '20888-encrypted-cert-key-doc'. Closes #20888
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Lucas Di Pentima [Fri, 8 Sep 2023 20:59:03 +0000 (17:59 -0300)]
20888: Applies suggested improvements.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Tom Clegg [Fri, 8 Sep 2023 20:06:57 +0000 (16:06 -0400)]
20930: Fix passing arvados.Client (with a sync.Mutex) by value.
Copying could occur while the original arvados.Client was being used
to fetch the discovery doc and had its Mutex locked.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Fri, 8 Sep 2023 20:31:39 +0000 (16:31 -0400)]
20930: Fix unhelpful test failure output.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Lucas Di Pentima [Fri, 8 Sep 2023 19:59:10 +0000 (16:59 -0300)]
20888: Expands the encrypted cert key feature's documentation.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Tom Clegg [Fri, 8 Sep 2023 13:39:38 +0000 (09:39 -0400)]
Avoid Python3.7 incompatibility introduced in typing_extensions 4.8.
refs #20905
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Lucas Di Pentima [Thu, 7 Sep 2023 13:07:18 +0000 (10:07 -0300)]
Merge branch '20889-installer-fixes'. Closes #20889
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Brett Smith [Tue, 5 Sep 2023 20:50:09 +0000 (16:50 -0400)]
Merge branch '20750-sharing-token-scopes'
Closes #20750.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Tue, 5 Sep 2023 20:46:54 +0000 (16:46 -0400)]
20750/20927: Add TODO about network error handling
The commit message for
9717f88d29310067fa70e19fb9afb3679c036bc4 says:
> This may also provide better behavior in cases of network hiccups or
> other remote server turbulence.
This was written with the expectation that those problems would raise
`HTTPClient::BadResponseError`. That was mistaken. Those problems
actually raise lower-level socket exceptions instead.
We now have a ticket to improve the error handling here. It's out of
scope for #20750, since the error handling is no worse than it was
before the branch.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Tue, 5 Sep 2023 20:46:48 +0000 (16:46 -0400)]
20750: Fix comment typo
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Tom Clegg [Tue, 5 Sep 2023 19:46:17 +0000 (15:46 -0400)]
Merge branch '20612-diag-ctr-api-access'
closes #20612
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Tue, 5 Sep 2023 19:39:33 +0000 (15:39 -0400)]
20612: Fix up punctuation/capitalization in docs.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Peter Amstutz [Tue, 5 Sep 2023 18:06:49 +0000 (14:06 -0400)]
20840: Fix broken url
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Mon, 4 Sep 2023 14:11:32 +0000 (10:11 -0400)]
Merge branch '20919-fix-proxy-url'
fixes #20919
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Peter Amstutz [Sun, 3 Sep 2023 17:52:40 +0000 (13:52 -0400)]
20850: Don't show wb2 deprecation notice to anonymous users
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Sun, 3 Sep 2023 17:36:49 +0000 (13:36 -0400)]
20840: Add deprecations to upgrade notes
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Sun, 3 Sep 2023 17:27:03 +0000 (13:27 -0400)]
20840: Add warning boxes to legacy APIs and rearrange API listing
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Sun, 3 Sep 2023 16:44:34 +0000 (12:44 -0400)]
20850: Fix test selector
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Fri, 1 Sep 2023 21:26:28 +0000 (17:26 -0400)]
20850: Add deprecation notice & wb2 redirect to every page
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Fri, 1 Sep 2023 18:22:51 +0000 (14:22 -0400)]
20612: Document diagnostics image building / container options.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Fri, 1 Sep 2023 17:47:08 +0000 (13:47 -0400)]
20612: Set DEBIAN_FRONTEND=noninteractive for container build.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Wed, 30 Aug 2023 18:30:27 +0000 (14:30 -0400)]
github-207: Fix outgoing Host header in proxy request.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Brett Smith [Thu, 31 Aug 2023 13:27:03 +0000 (09:27 -0400)]
20915: Add missing import to _pycurlhelper
Closes #20915.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
George Chlipala [Mon, 28 Aug 2023 21:57:06 +0000 (16:57 -0500)]
Fix for cached files from arvados-controller
Arvados-DCO-1.1-Signed-off-by: George Chlipala <gchlip2@uic.edu>
Tom Clegg [Wed, 30 Aug 2023 13:05:02 +0000 (09:05 -0400)]
20862: Revert i18n to earlier version for rails 5 compatibility.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Tue, 29 Aug 2023 19:12:59 +0000 (15:12 -0400)]
20862: Update gemfiles to use arvados-2.7.0.rc2.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Tue, 29 Aug 2023 18:55:44 +0000 (14:55 -0400)]
20862: Update gemfiles to use arvados-2.7.0.rc1.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Tue, 29 Aug 2023 18:50:43 +0000 (14:50 -0400)]
20862: Fix i18n dependency to not conflict with Rails 6.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Peter Amstutz [Tue, 29 Aug 2023 18:15:08 +0000 (14:15 -0400)]
Merge branch '20877-trashed-priority' refs #20877
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Tue, 29 Aug 2023 17:32:16 +0000 (13:32 -0400)]
20862: Merge branch 'main' into 20862-google-api-client
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Brett Smith [Tue, 29 Aug 2023 15:41:10 +0000 (11:41 -0400)]
Merge branch '20839-pysdk-deprecations'
Closes #20839.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Tom Clegg [Tue, 29 Aug 2023 15:25:57 +0000 (11:25 -0400)]
20862: Re-run bundle after deleting bogus locally cached gem files.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Peter Amstutz [Tue, 29 Aug 2023 15:04:03 +0000 (11:04 -0400)]
20877: Do not create log or output collections if parent is frozen or trashed
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Tue, 29 Aug 2023 13:16:00 +0000 (09:16 -0400)]
Merge branch '20757-ctr-shell-settings'
fixes #20757
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Brett Smith [Mon, 28 Aug 2023 20:26:41 +0000 (16:26 -0400)]
20836: Update test_select for Py<3.8 compatibility
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Sun, 27 Aug 2023 02:13:39 +0000 (22:13 -0400)]
20839: Mark deprecated PySDK functions as such
This is in preparation to remove these from the SDK in Arvados 3.0.
These changes exacerbated the circular import between the top-level
arvados and util, which had knock-off effects on other import
statements, causing them to see the world differently (like whether
`arvados.api` is a module or function). Most of the import-related
shuffling is meant to mitigate all that.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Sun, 27 Aug 2023 03:59:21 +0000 (23:59 -0400)]
20839: Add order_key to select in keyset_list_all
Like uuid, the main loop requires this field.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Sun, 27 Aug 2023 02:52:13 +0000 (22:52 -0400)]
20839: Replace arvados.util.mkdir_dash_p calls throughout
In preparation to deprecate the function.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Sun, 27 Aug 2023 02:01:32 +0000 (22:01 -0400)]
20839: Replace arvados.util.list_all calls throughout
In preparation to deprecate this function. This does leave a couple
calls in arv-docker-migrate19, but that command will also be deprecated
and removed at least as soon as the function.
The changes to the the sdk/cwl/tests/test_submit.py mocks are necessary
because of mechanical differences between list_all and keyset_list_all.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
test fixup
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Tom Clegg [Mon, 28 Aug 2023 18:40:05 +0000 (14:40 -0400)]
20757: Split tests into separate funcs.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Tom Clegg [Mon, 28 Aug 2023 14:23:34 +0000 (10:23 -0400)]
20612: Run diagnostics from inside the test container too.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Brett Smith [Sun, 27 Aug 2023 01:55:39 +0000 (21:55 -0400)]
20839: Optimize list sort
Trivial optimization I noticed while working around here.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Sun, 27 Aug 2023 01:42:20 +0000 (21:42 -0400)]
20839: Replace arvados.util.run_command calls in arv-copy
In preparation for deprecating this function.
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Brett Smith [Sat, 26 Aug 2023 23:32:53 +0000 (19:32 -0400)]
20839: Remove old Python 2 TextIOWrapper shim
Arvados-DCO-1.1-Signed-off-by: Brett Smith <brett.smith@curii.com>
Lucas Di Pentima [Fri, 25 Aug 2023 19:20:08 +0000 (16:20 -0300)]
20889: Fixes Keep S3 bucket instructions.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Lucas Di Pentima [Fri, 25 Aug 2023 19:13:22 +0000 (16:13 -0300)]
20889: Adds documentation explaining the use of TLS cert keys encryption.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Lucas Di Pentima [Fri, 25 Aug 2023 18:30:04 +0000 (15:30 -0300)]
20889: Fixes installer.sh indentation to match the how provision.sh is written.
It had a mix of space-based and tab-based indentation that made code a bit
difficult to read.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Lucas Di Pentima [Fri, 25 Aug 2023 18:22:56 +0000 (15:22 -0300)]
20889: Checks that cert files are present before trying to use them.
Also, some documentation fixes.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>
Tom Clegg [Fri, 25 Aug 2023 16:28:56 +0000 (12:28 -0400)]
20757: `arvados-client shell` uses settings.conf if present.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
Peter Amstutz [Fri, 25 Aug 2023 14:49:33 +0000 (10:49 -0400)]
Merge branch '20877-trashed-priority' refs #20877
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
projects / arvados.git / log