Tom Clegg [Tue, 7 Apr 2020 19:25:16 +0000 (15:25 -0400)]
Merge branch '16053-install-deps'
refs #16053
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Tue, 7 Apr 2020 14:32:48 +0000 (10:32 -0400)]
16053: Avoid using host's tmp/cache dir in railsapi.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Mon, 6 Apr 2020 19:54:34 +0000 (15:54 -0400)]
Merge branch '16217-ws-metrics'
refs #16217
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Thu, 2 Apr 2020 15:33:46 +0000 (11:33 -0400)]
Merge branch '16270-instance-type'
fixes #16270
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Wed, 1 Apr 2020 20:44:02 +0000 (16:44 -0400)]
16270: Fill in missing scratch fields on InstanceType entries.
Previously they were being filled in correctly when written as an
array in the config file, but not when written as a map.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Wed, 1 Apr 2020 17:42:43 +0000 (13:42 -0400)]
16217: Restore http.Hijacker capability to wrapped ResponseWriter.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Wed, 1 Apr 2020 17:42:08 +0000 (13:42 -0400)]
16217: Fix test (satisfy additional handler interface).
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Wed, 1 Apr 2020 15:59:06 +0000 (11:59 -0400)]
16217: Update startup scripts to run "arvados-server ws".
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Tue, 31 Mar 2020 20:55:16 +0000 (16:55 -0400)]
16217: Update boot command to run ws via arvados-server.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Tue, 31 Mar 2020 20:51:35 +0000 (16:51 -0400)]
16217: Merge branch 'master'
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Tue, 31 Mar 2020 17:52:23 +0000 (13:52 -0400)]
16053: Merge branch 'master'
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Tue, 31 Mar 2020 17:51:31 +0000 (13:51 -0400)]
16053: Error out on unimplemented install in production mode.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Lucas Di Pentima [Fri, 27 Mar 2020 15:04:07 +0000 (12:04 -0300)]
Merge branch '16265-security-updates'
Closes #16265
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Fri, 27 Mar 2020 14:21:36 +0000 (11:21 -0300)]
Merge branch '16266-wb1-xss-fix'
Closes #16266
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Thu, 26 Mar 2020 17:02:40 +0000 (14:02 -0300)]
16265: Merge branch 'dependabot/bundler/services/api/nokogiri-1.10.8' into 16265-security-updates
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Thu, 26 Mar 2020 17:02:24 +0000 (14:02 -0300)]
Merge branch '16265-security-updates' into dependabot/bundler/services/api/nokogiri-1.10.8
Lucas Di Pentima [Thu, 26 Mar 2020 16:59:58 +0000 (13:59 -0300)]
16265: Merge branch 'dependabot/bundler/apps/workbench/loofah-2.3.1' into 16265-security-updates
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Thu, 26 Mar 2020 16:59:19 +0000 (13:59 -0300)]
Merge branch '16265-security-updates' into dependabot/bundler/apps/workbench/loofah-2.3.1
Lucas Di Pentima [Thu, 26 Mar 2020 16:56:37 +0000 (13:56 -0300)]
16265: Merge branch 'dependabot/bundler/apps/workbench/nokogiri-1.10.8' into 16265-security-updates
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Thu, 26 Mar 2020 16:56:18 +0000 (13:56 -0300)]
Merge branch '16265-security-updates' into dependabot/bundler/apps/workbench/nokogiri-1.10.8
Lucas Di Pentima [Thu, 26 Mar 2020 16:54:26 +0000 (13:54 -0300)]
16265: Merge branch 'dependabot/bundler/apps/workbench/rake-13.0.1' into 16265-security-updates
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Thu, 26 Mar 2020 16:54:07 +0000 (13:54 -0300)]
Merge branch '16265-security-updates' into dependabot/bundler/apps/workbench/rake-13.0.1
Lucas Di Pentima [Thu, 26 Mar 2020 16:46:52 +0000 (13:46 -0300)]
16265: Merge branch 'dependabot/bundler/services/api/rake-13.0.1' into 16265-security-updates
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Thu, 26 Mar 2020 16:45:27 +0000 (13:45 -0300)]
Merge branch '16265-security-updates' into dependabot/bundler/services/api/rake-13.0.1
Lucas Di Pentima [Mon, 23 Mar 2020 21:07:56 +0000 (18:07 -0300)]
16266: Applies monkeypatch to fix CVE-2020-5267 on workbench1.
As adviced on https://github.com/advisories/GHSA-65cv-r6x7-79hv
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Thu, 26 Mar 2020 16:29:40 +0000 (13:29 -0300)]
16266: Adds tests exposing potential XSS vulnerability on escape_javascript()
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Tom Clegg [Thu, 26 Mar 2020 15:24:31 +0000 (11:24 -0400)]
16217: Update docs.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Wed, 25 Mar 2020 20:54:59 +0000 (16:54 -0400)]
16217: Remove old status/debug endpoints, test /metrics instead.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Wed, 25 Mar 2020 20:23:41 +0000 (16:23 -0400)]
16217: Add prometheus metrics.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Wed, 25 Mar 2020 18:57:42 +0000 (14:57 -0400)]
16053: Specify utf8 encoding when creating databases.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Peter Amstutz [Wed, 25 Mar 2020 18:35:51 +0000 (14:35 -0400)]
Merge branch '16138-fix-arv-copy' refs #16138
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 25 Mar 2020 17:53:25 +0000 (13:53 -0400)]
Merge branch 'Majewski/feature/links-client' refs #16260
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Wed, 25 Mar 2020 15:28:25 +0000 (11:28 -0400)]
16217: Exit service command if the service handler fails.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Wed, 25 Mar 2020 15:00:03 +0000 (11:00 -0400)]
16217: Refactor ws to use lib/service.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Tue, 24 Mar 2020 19:40:59 +0000 (15:40 -0400)]
16053: Add ca-certificates to deps.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Tue, 24 Mar 2020 16:12:30 +0000 (12:12 -0400)]
16053: Add example script for installing from scratch.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Tue, 24 Mar 2020 16:03:36 +0000 (12:03 -0400)]
16053: Add scripts for running tests in docker.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Peter Amstutz [Tue, 24 Mar 2020 19:35:38 +0000 (15:35 -0400)]
16138: Remove additional/code references to copying pipelines
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 24 Mar 2020 17:23:01 +0000 (13:23 -0400)]
Remove python2 arvados-cwl-runner package build, only python3
refs #12409
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Mon, 23 Mar 2020 21:40:29 +0000 (17:40 -0400)]
16053: Fix check for installed bundler versions.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Mon, 23 Mar 2020 20:30:55 +0000 (16:30 -0400)]
16053: Fix test for already-installed en_US.UTF-8 locale.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Mon, 23 Mar 2020 19:21:44 +0000 (15:21 -0400)]
15063: Fix tests to accommodate curl speed check granularity.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Mon, 23 Mar 2020 18:19:10 +0000 (14:19 -0400)]
16053: Fix keepstore tests that fail when running as root.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Mon, 23 Mar 2020 18:02:57 +0000 (14:02 -0400)]
16053: Upgrade mockito for JDK 11 compatibility.
Fixes:
17:19:59.486 [DEBUG] [TestEventLogger] org.arvados.client.logic.keep.FileDownloaderTest STARTED
17:19:59.573 [DEBUG] [TestEventLogger]
17:19:59.573 [DEBUG] [TestEventLogger] org.arvados.client.logic.keep.FileDownloaderTest > classMethod STARTED
17:19:59.593 [DEBUG] [TestEventLogger]
17:19:59.594 [DEBUG] [TestEventLogger] org.arvados.client.logic.keep.FileDownloaderTest > classMethod FAILED
17:19:59.594 [DEBUG] [TestEventLogger] org.mockito.exceptions.base.MockitoException:
17:19:59.594 [DEBUG] [TestEventLogger] Mockito cannot mock this class: class org.arvados.client.api.client.CollectionsApiClient.
17:19:59.594 [DEBUG] [TestEventLogger]
17:19:59.594 [DEBUG] [TestEventLogger] If you're not sure why you're getting this error, please report to the mailing list.
17:19:59.594 [DEBUG] [TestEventLogger]
17:19:59.594 [DEBUG] [TestEventLogger]
17:19:59.594 [DEBUG] [TestEventLogger] Java : 11
17:19:59.595 [DEBUG] [TestEventLogger] JVM vendor name : Debian
17:19:59.595 [DEBUG] [TestEventLogger] JVM vendor version : 11.0.6+10-post-Debian-1deb10u1
17:19:59.595 [DEBUG] [TestEventLogger] JVM name : OpenJDK 64-Bit Server VM
17:19:59.595 [DEBUG] [TestEventLogger] JVM version : 11.0.6+10-post-Debian-1deb10u1
17:19:59.595 [DEBUG] [TestEventLogger] JVM info : mixed mode, sharing
17:19:59.595 [DEBUG] [TestEventLogger] OS name : Linux
17:19:59.595 [DEBUG] [TestEventLogger] OS version : 4.9.0-12-amd64
17:19:59.595 [DEBUG] [TestEventLogger]
17:19:59.595 [DEBUG] [TestEventLogger]
17:19:59.595 [DEBUG] [TestEventLogger] You are seeing this disclaimer because Mockito is configured to create inlined mocks.
17:19:59.595 [DEBUG] [TestEventLogger] You can learn about inline mocks and their limitations under item #39 of the Mockito class javadoc.
17:19:59.595 [DEBUG] [TestEventLogger]
17:19:59.595 [DEBUG] [TestEventLogger] Underlying exception : org.mockito.exceptions.base.MockitoException: Could not modify all classes [class java.lang.Object, class org.arvados.client.api.client.BaseApiClient, class org.arvados.client.api.client.CollectionsApiClient, class org.arvados.client.api.client.BaseStandardApiClient]
17:19:59.595 [DEBUG] [TestEventLogger] at org.mockito.internal.runners.DefaultInternalRunner$1.withBefores(DefaultInternalRunner.java:38)
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Mon, 23 Mar 2020 16:42:14 +0000 (12:42 -0400)]
16053: Pass along test args to gradle in java-v2 test suite.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Mon, 23 Mar 2020 16:39:37 +0000 (12:39 -0400)]
16053: Install java runtime and jdk.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Peter Amstutz [Mon, 23 Mar 2020 15:00:07 +0000 (11:00 -0400)]
16138: Remove additional pipelines related code
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Fri, 20 Mar 2020 21:04:38 +0000 (17:04 -0400)]
16053: Install gradle.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Peter Amstutz [Fri, 20 Mar 2020 19:47:00 +0000 (15:47 -0400)]
16138: whitelist fields for arv-copy
Also removed code for copying
PipelineTemplate/PipelineInstance (obsolete jobs API).
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Thu, 19 Mar 2020 20:29:50 +0000 (16:29 -0400)]
16053: Fix warnings when installer cwd is not readable by postgres.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Thu, 19 Mar 2020 18:57:26 +0000 (14:57 -0400)]
16053: Fix permissions for test db user.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Thu, 19 Mar 2020 17:35:23 +0000 (13:35 -0400)]
16053: Run initdb, start postgresql, and add arvados user if needed.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Thu, 19 Mar 2020 17:34:57 +0000 (13:34 -0400)]
16053: Install all three needed versions of bundler.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Thu, 19 Mar 2020 17:34:35 +0000 (13:34 -0400)]
16053: Make CONFIGSRC optional again.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Peter Amstutz [Wed, 18 Mar 2020 19:15:27 +0000 (15:15 -0400)]
Merge branch '12409-cwl-v1.2' refs #12409
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 17 Mar 2020 21:08:44 +0000 (17:08 -0400)]
12409: Bump cwltool version for more bugfixing.
The tests pass, and the tests confirm that the packed workflow is the
original version and not the upgraded version, which is what we
wanted.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Tue, 17 Mar 2020 13:37:15 +0000 (09:37 -0400)]
16053: Remove unneeded GOPATH mangling.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Tue, 17 Mar 2020 13:28:15 +0000 (09:28 -0400)]
16053: Note test timeout trap.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Krzysztof Majewski [Tue, 17 Mar 2020 07:52:50 +0000 (08:52 +0100)]
Add Links API client.
Arvados-DCO-1.1-Signed-off-by: Krzysztof Majewski <majewski.kielce@gmail.com>
Krzysztof Majewski [Tue, 17 Mar 2020 07:49:50 +0000 (08:49 +0100)]
Merge pull request #1 from arvados/master
update
Tom Clegg [Mon, 16 Mar 2020 21:00:21 +0000 (17:00 -0400)]
16053: Add debian:10 install-and-boot test.
Run with "go test -check.vv -tags docker".
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Mon, 16 Mar 2020 20:22:21 +0000 (16:22 -0400)]
16053: Install en_US.UTF-8 locale.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Mon, 16 Mar 2020 20:22:09 +0000 (16:22 -0400)]
16053: Less verbose wget progress bars.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Mon, 16 Mar 2020 20:21:28 +0000 (16:21 -0400)]
16053: Prefer dependencies in /var/lib/arvados/bin if they exist.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Mon, 16 Mar 2020 20:20:51 +0000 (16:20 -0400)]
16053: Use setuidgid instead of sudo to drop privileges.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Mon, 16 Mar 2020 20:04:31 +0000 (16:04 -0400)]
16053: Add boot flags: -timeout and -shutdown.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Lucas Di Pentima [Mon, 16 Mar 2020 13:56:28 +0000 (10:56 -0300)]
Merge branch '16029-arvboot-wss-fix'. Refs #16029
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Mon, 16 Mar 2020 13:08:15 +0000 (10:08 -0300)]
16029: Makes gofmt happy.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Sat, 14 Mar 2020 14:01:45 +0000 (11:01 -0300)]
16029: Fixes Websockets' ExternalURL config on arvados-boot.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Tom Clegg [Sat, 14 Mar 2020 01:16:56 +0000 (21:16 -0400)]
16053: Add "install" command.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Sat, 14 Mar 2020 01:16:36 +0000 (21:16 -0400)]
16053: Run postgresql as "postgres" user if supervisor is root.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Sat, 14 Mar 2020 01:13:37 +0000 (21:13 -0400)]
16053: 15954: Use auto-generated certificates in nginx config.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Peter Amstutz [Fri, 13 Mar 2020 17:45:07 +0000 (13:45 -0400)]
Merge branch '16129-scoped-token-doc' refs #16129
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Fri, 13 Mar 2020 17:17:43 +0000 (13:17 -0400)]
16129: Improve text and add links from comments
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 12 Mar 2020 21:46:21 +0000 (17:46 -0400)]
16129: Link to collection sharing link example.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 12 Mar 2020 21:10:59 +0000 (17:10 -0400)]
16129: Revise scoped token docs a bit, more examples
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Thu, 12 Mar 2020 20:12:31 +0000 (16:12 -0400)]
Merge branch '16221-arv-mount-api-1.x'
fixes #16221
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Peter Amstutz [Thu, 12 Mar 2020 19:06:09 +0000 (15:06 -0400)]
12409: Fix packing bug in cwltool, bump dependency on cwltool
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Thu, 12 Mar 2020 13:41:55 +0000 (09:41 -0400)]
Merge branch '16217-ws-ping'
refs #16217
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Thu, 12 Mar 2020 04:15:16 +0000 (00:15 -0400)]
16221: Fix test for config endpoint.
x['configs'] raises KeyError on an old discovery doc -- test
x.get('configs', False) instead.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Wed, 11 Mar 2020 20:52:04 +0000 (16:52 -0400)]
Fix instance IDs in arvados-dispatch-cloud log messages.
Some logs had {"Instance": {}} instead of the provider's instance ID.
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Peter Amstutz [Wed, 11 Mar 2020 20:05:48 +0000 (16:05 -0400)]
12409: Preserve CWL document version when using RunInSingleContainer
Also update cwltool dependency and remove the workaround from #16169
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 10 Mar 2020 22:24:19 +0000 (18:24 -0400)]
16129: Scoped token doc WIP
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 10 Mar 2020 20:53:41 +0000 (16:53 -0400)]
12409: Update schema-salad pin to latest
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 10 Mar 2020 19:55:50 +0000 (15:55 -0400)]
12409: Bump ruamel.yaml version pin on python sdk
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Tom Clegg [Tue, 10 Mar 2020 18:01:36 +0000 (14:01 -0400)]
Merge branch '15954-boot-test-cluster'
refs #15954
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Tue, 10 Mar 2020 15:15:49 +0000 (11:15 -0400)]
15954: Merge branch 'master'
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Tue, 10 Mar 2020 14:51:41 +0000 (10:51 -0400)]
15954: Turn off exec bits on temp config file mode.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Tue, 10 Mar 2020 14:48:12 +0000 (10:48 -0400)]
15954: Add comment about stdout.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Tue, 10 Mar 2020 14:41:31 +0000 (10:41 -0400)]
15954: Dedup find-available-port logic.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Tue, 10 Mar 2020 14:41:01 +0000 (10:41 -0400)]
15954: Fix wrong func name in comment.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Tue, 10 Mar 2020 14:40:45 +0000 (10:40 -0400)]
15954: Fix style, handle errors first.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Tue, 10 Mar 2020 14:40:25 +0000 (10:40 -0400)]
15954: Remove superfluous argument to autofillConfig.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Tue, 10 Mar 2020 14:40:04 +0000 (10:40 -0400)]
15954: Use logger instead of writing to stderr.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Tue, 10 Mar 2020 14:39:41 +0000 (10:39 -0400)]
15954: Turn off group/other-write bits, even if permitted by umask.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Peter Amstutz [Mon, 9 Mar 2020 22:07:03 +0000 (18:07 -0400)]
12409: Fix tests
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 27 Feb 2020 23:10:22 +0000 (18:10 -0500)]
12409: Interactive mode testargs works for py3
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 26 Feb 2020 19:18:53 +0000 (14:18 -0500)]
12409: Only run sdk/cwl tests py3
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 26 Feb 2020 18:55:46 +0000 (13:55 -0500)]
12409: Add --devcwl
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 26 Feb 2020 18:38:05 +0000 (13:38 -0500)]
12409: test_with_arvbox work in progress
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
projects / arvados.git / log