12409: Fix tests

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

diff --git a/sdk/cwl/tests/test_container.py b/sdk/cwl/tests/test_container.py
index cb6cfbadbdb00dcfe56872683b5851017eeb0f8f..8677db92a062df3bc954b5f3caf98cbd73172eef 100644 (file)
--- a/sdk/cwl/tests/test_container.py
+++ b/sdk/cwl/tests/test_container.py
@@ -18,6 +18,7 @@ import os
 import functools
 import cwltool.process
 import cwltool.secrets
+from cwltool.update import INTERNAL_VERSION
 from schema_salad.ref_resolver import Loader
 from schema_salad.sourceline import cmap
 
@@ -60,7 +61,7 @@ class TestContainer(unittest.TestCase):
         cwltool.process._names = set()
 
     def helper(self, runner, enable_reuse=True):
-        document_loader, avsc_names, schema_metadata, metaschema_loader = cwltool.process.get_schema("v1.1")
+        document_loader, avsc_names, schema_metadata, metaschema_loader = cwltool.process.get_schema(INTERNAL_VERSION)
 
         make_fs_access=functools.partial(arvados_cwl.CollectionFsAccess,
                                          collection_cache=arvados_cwl.CollectionCache(runner.api, None, 0))
@@ -69,7 +70,7 @@ class TestContainer(unittest.TestCase):
              "basedir": "",
              "make_fs_access": make_fs_access,
              "loader": Loader({}),
-             "metadata": {"cwlVersion": "v1.1", "http://commonwl.org/cwltool#original_cwlVersion": "v1.0"}})
+             "metadata": {"cwlVersion": INTERNAL_VERSION, "http://commonwl.org/cwltool#original_cwlVersion": "v1.0"}})
         runtimeContext = arvados_cwl.context.ArvRuntimeContext(
             {"work_api": "containers",
              "basedir": "",
@@ -402,7 +403,7 @@ class TestContainer(unittest.TestCase):
         runner.api.collections().get().execute.return_value = {
             "portable_data_hash": "99999999999999999999999999999993+99"}
 
-        document_loader, avsc_names, schema_metadata, metaschema_loader = cwltool.process.get_schema("v1.1")
+        document_loader, avsc_names, schema_metadata, metaschema_loader = cwltool.process.get_schema(INTERNAL_VERSION)
 
         tool = cmap({
             "inputs": [],
@@ -863,7 +864,7 @@ class TestWorkflow(unittest.TestCase):
              "basedir": "",
              "make_fs_access": make_fs_access,
              "loader": document_loader,
-             "metadata": {"cwlVersion": "v1.1", "http://commonwl.org/cwltool#original_cwlVersion": "v1.0"},
+             "metadata": {"cwlVersion": INTERNAL_VERSION, "http://commonwl.org/cwltool#original_cwlVersion": "v1.0"},
              "construct_tool_object": runner.arv_make_tool})
         runtimeContext = arvados_cwl.context.ArvRuntimeContext(
             {"work_api": "containers",

diff --git a/sdk/cwl/tests/test_submit.py b/sdk/cwl/tests/test_submit.py
index 397ae142253d26b41d11aee03586fbc3e352bb31..562664c698b34df87ec2f19eb64d867ec5461698 100644 (file)
--- a/sdk/cwl/tests/test_submit.py
+++ b/sdk/cwl/tests/test_submit.py
@@ -18,6 +18,7 @@ import mock
 import sys
 import unittest
 import cwltool.process
+import re
 
 from io import BytesIO
 
@@ -1312,7 +1313,7 @@ class TestSubmit(unittest.TestCase):
 
                 self.assertEqual(exited, 1)
                 self.assertRegexpMatches(
-                    capture_stderr.getvalue(),
+                    re.sub(r'[ \n]+', ' ', capture_stderr.getvalue()),
                     r"Expected collection uuid zzzzz-4zz18-zzzzzzzzzzzzzzz to be 99999999999999999999999999999998\+99 but API server reported 99999999999999999999999999999997\+99")
             finally:
                 cwltool_logger.removeHandler(stderr_logger)

diff --git a/sdk/cwl/tests/wf/scatter2_subwf.cwl b/sdk/cwl/tests/wf/scatter2_subwf.cwl
index 7a07de5bd23885b25a4627b6260b0e04ac82daba..035c1e97e0499649f6f7e4993e99f7ba566f6a50 100644 (file)
--- a/sdk/cwl/tests/wf/scatter2_subwf.cwl
+++ b/sdk/cwl/tests/wf/scatter2_subwf.cwl
@@ -6,7 +6,7 @@
   "$graph": [
     {
       "class": "Workflow",
-      "cwlVersion": "v1.1",
+      "cwlVersion": "v1.2.0-dev1",
       "hints": [],
       "id": "#main",
       "inputs": [
@@ -83,5 +83,5 @@
       ]
     }
   ],
-  "cwlVersion": "v1.1"
+  "cwlVersion": "v1.2.0-dev1"
 }