arvados.git
11 years agostart ruby sdk
Tom Clegg [Thu, 25 Apr 2013 06:05:34 +0000 (23:05 -0700)]
start ruby sdk

11 years agoadd PUT and SHA1 support
Tom Clegg [Thu, 25 Apr 2013 00:00:18 +0000 (17:00 -0700)]
add PUT and SHA1 support

11 years agochange keep server to sinatra modular style
Tom Clegg [Wed, 24 Apr 2013 23:27:54 +0000 (16:27 -0700)]
change keep server to sinatra modular style

11 years agostart ruby+sinatra keep server
Tom Clegg [Wed, 24 Apr 2013 00:22:32 +0000 (17:22 -0700)]
start ruby+sinatra keep server

11 years agotweak front page title kerning
Tom Clegg [Mon, 15 Apr 2013 16:48:43 +0000 (09:48 -0700)]
tweak front page title kerning

11 years agocope better with unexpected pipeline structure
Tom Clegg [Mon, 15 Apr 2013 02:44:54 +0000 (19:44 -0700)]
cope better with unexpected pipeline structure

11 years agoclean up workbench menu bar
Tom Clegg [Mon, 15 Apr 2013 02:43:47 +0000 (19:43 -0700)]
clean up workbench menu bar

11 years agofix migration
Tom Clegg [Mon, 15 Apr 2013 02:19:38 +0000 (19:19 -0700)]
fix migration

11 years agorename projects
Tom Clegg [Mon, 15 Apr 2013 02:19:25 +0000 (19:19 -0700)]
rename projects

11 years agoadd "incomplete" alert boxes
Tom Clegg [Fri, 12 Apr 2013 23:20:50 +0000 (16:20 -0700)]
add "incomplete" alert boxes

11 years agofix favicon path
Tom Clegg [Thu, 11 Apr 2013 19:19:01 +0000 (12:19 -0700)]
fix favicon path

11 years agochange favicon
Tom Clegg [Thu, 11 Apr 2013 19:15:41 +0000 (12:15 -0700)]
change favicon

11 years agofix doc header alignment some more
Tom Clegg [Thu, 11 Apr 2013 18:06:29 +0000 (11:06 -0700)]
fix doc header alignment some more

11 years agofix doc header alignment some more
Tom Clegg [Thu, 11 Apr 2013 17:53:52 +0000 (10:53 -0700)]
fix doc header alignment some more

11 years agofix doc front page title/text alignment
Tom Clegg [Thu, 11 Apr 2013 17:49:43 +0000 (10:49 -0700)]
fix doc front page title/text alignment

11 years agofix doc front page subtitle word wrap
Tom Clegg [Thu, 11 Apr 2013 16:51:33 +0000 (09:51 -0700)]
fix doc front page subtitle word wrap

11 years agofix doc front page header image
Tom Clegg [Thu, 11 Apr 2013 16:41:14 +0000 (09:41 -0700)]
fix doc front page header image

11 years agomobile fix for doc side nav
Tom Clegg [Thu, 11 Apr 2013 15:54:55 +0000 (08:54 -0700)]
mobile fix for doc side nav

11 years agotweak page titles, add link to arvados.org
Tom Clegg [Thu, 11 Apr 2013 06:08:30 +0000 (23:08 -0700)]
tweak page titles, add link to arvados.org

11 years agorework front page
Tom Clegg [Thu, 11 Apr 2013 05:42:43 +0000 (22:42 -0700)]
rework front page

11 years agoadd api/Collections and unlink missing resources on index page
Tom Clegg [Thu, 11 Apr 2013 02:13:30 +0000 (19:13 -0700)]
add api/Collections and unlink missing resources on index page

11 years agorename explorer -> workbench
Tom Clegg [Wed, 10 Apr 2013 21:45:21 +0000 (14:45 -0700)]
rename explorer -> workbench

11 years agofix links, rename orvos
Tom Clegg [Wed, 10 Apr 2013 20:41:43 +0000 (13:41 -0700)]
fix links, rename orvos

11 years agofix titles of api/Jobs and api/Links pages
Tom Clegg [Wed, 10 Apr 2013 20:38:14 +0000 (13:38 -0700)]
fix titles of api/Jobs and api/Links pages

11 years agoadd api/Jobs
Tom Clegg [Wed, 10 Apr 2013 20:34:35 +0000 (13:34 -0700)]
add api/Jobs

11 years agoadd api/Links
Tom Clegg [Wed, 10 Apr 2013 20:30:01 +0000 (13:30 -0700)]
add api/Links

11 years agorename api resources pages
Tom Clegg [Wed, 10 Apr 2013 20:23:39 +0000 (13:23 -0700)]
rename api resources pages

11 years agofix up api index
Tom Clegg [Wed, 10 Apr 2013 20:11:12 +0000 (13:11 -0700)]
fix up api index

11 years agoxref to list of resources
Tom Clegg [Wed, 10 Apr 2013 20:01:33 +0000 (13:01 -0700)]
xref to list of resources

11 years agotweak front page
Tom Clegg [Wed, 10 Apr 2013 19:48:51 +0000 (12:48 -0700)]
tweak front page

11 years agouse bootstrap nav-list instead of hacked nav-stacked
Tom Clegg [Wed, 10 Apr 2013 19:36:46 +0000 (12:36 -0700)]
use bootstrap nav-list instead of hacked nav-stacked

11 years agosplit User into User Guide and API Reference
Tom Clegg [Wed, 10 Apr 2013 19:09:49 +0000 (12:09 -0700)]
split User into User Guide and API Reference

11 years agofix ssh link
Tom Clegg [Wed, 10 Apr 2013 18:26:41 +0000 (11:26 -0700)]
fix ssh link

11 years agoadd Keep vocabulary
Tom Clegg [Wed, 10 Apr 2013 17:42:07 +0000 (10:42 -0700)]
add Keep vocabulary

11 years agoadd job pages
Tom Clegg [Wed, 10 Apr 2013 15:57:27 +0000 (08:57 -0700)]
add job pages

11 years agoMerge branch 'explorer'
Ward Vandewege [Wed, 10 Apr 2013 16:08:34 +0000 (12:08 -0400)]
Merge branch 'explorer'

11 years agomoved explorer into new directory structure
Ward Vandewege [Wed, 10 Apr 2013 16:08:18 +0000 (12:08 -0400)]
moved explorer into new directory structure

11 years agoMerge branch 'clients'
Ward Vandewege [Wed, 10 Apr 2013 15:40:48 +0000 (11:40 -0400)]
Merge branch 'clients'

11 years agoreorganized repo structure
Ward Vandewege [Wed, 10 Apr 2013 15:40:35 +0000 (11:40 -0400)]
reorganized repo structure

11 years agomoved api server code into new directory structure
Ward Vandewege [Wed, 10 Apr 2013 15:26:58 +0000 (11:26 -0400)]
moved api server code into new directory structure

11 years agoadd a bunch of API pages
Tom Clegg [Wed, 10 Apr 2013 02:07:08 +0000 (19:07 -0700)]
add a bunch of API pages

11 years agohighlight active side nav
Tom Clegg [Wed, 10 Apr 2013 01:10:56 +0000 (18:10 -0700)]
highlight active side nav

11 years agouse arvados.org favicon
Tom Clegg [Wed, 10 Apr 2013 00:09:12 +0000 (17:09 -0700)]
use arvados.org favicon

11 years agoadd provenance, using git, using keep pages
Tom Clegg [Tue, 9 Apr 2013 22:17:13 +0000 (15:17 -0700)]
add provenance, using git, using keep pages

11 years agorename ssh keys -> ssh access
Tom Clegg [Tue, 9 Apr 2013 21:44:00 +0000 (14:44 -0700)]
rename ssh keys -> ssh access

11 years agotweak front page of doc
Tom Clegg [Tue, 9 Apr 2013 21:30:46 +0000 (14:30 -0700)]
tweak front page of doc

11 years agoadd ssh keys page
Tom Clegg [Tue, 9 Apr 2013 21:27:25 +0000 (14:27 -0700)]
add ssh keys page

11 years agofix "active section" style
Tom Clegg [Tue, 9 Apr 2013 20:45:37 +0000 (13:45 -0700)]
fix "active section" style

11 years agoadd jekyll doc tree
Tom Clegg [Tue, 9 Apr 2013 19:15:30 +0000 (12:15 -0700)]
add jekyll doc tree

11 years agoadded initial python wh file
Samuel Shapiro [Fri, 29 Mar 2013 17:32:53 +0000 (13:32 -0400)]
added initial python wh file

11 years agoset instance.success when finished. refs #1424
Tom Clegg [Wed, 27 Mar 2013 19:26:45 +0000 (12:26 -0700)]
set instance.success when finished. refs #1424

11 years agoadd --create-only and --instance arguments. refs #1448
Tom Clegg [Wed, 27 Mar 2013 00:14:59 +0000 (17:14 -0700)]
add --create-only and --instance arguments. refs #1448

11 years agotweak serialized attribute search. refs #1447
Tom Clegg [Wed, 27 Mar 2013 00:43:23 +0000 (17:43 -0700)]
tweak serialized attribute search. refs #1447

11 years agopass component[:script_parameters] to server when searching for jobs. refs #1447
Tom Clegg [Tue, 26 Mar 2013 23:39:19 +0000 (16:39 -0700)]
pass component[:script_parameters] to server when searching for jobs. refs #1447

11 years agohack search on serialized fields. refs #1447
Tom Clegg [Tue, 26 Mar 2013 23:38:07 +0000 (16:38 -0700)]
hack search on serialized fields. refs #1447

11 years agofix crash on non-string job#script_parameters
Tom Clegg [Tue, 26 Mar 2013 23:37:29 +0000 (16:37 -0700)]
fix crash on non-string job#script_parameters

11 years agopass component[:script_version_descends_from] to server when searching for jobs....
Tom Clegg [Tue, 26 Mar 2013 23:10:04 +0000 (16:10 -0700)]
pass component[:script_version_descends_from] to server when searching for jobs. refs #1445

11 years agoTweak git commit lookup. refs #1445
Tom Clegg [Tue, 26 Mar 2013 22:47:52 +0000 (15:47 -0700)]
Tweak git commit lookup. refs #1445

11 years agoSupport searching jobs by script_version_descends_from. refs #1445
Tom Clegg [Tue, 26 Mar 2013 22:24:37 +0000 (15:24 -0700)]
Support searching jobs by script_version_descends_from. refs #1445

11 years agoadd config.git_repositories_dir. refs #1445
Tom Clegg [Mon, 25 Mar 2013 18:51:47 +0000 (11:51 -0700)]
add config.git_repositories_dir. refs #1445

11 years agodo not include ApiClient* in discovery document. refs #1405 refs #1406
Tom Clegg [Mon, 25 Mar 2013 18:50:53 +0000 (11:50 -0700)]
do not include ApiClient* in discovery document. refs #1405 refs #1406

11 years agoshow pipeline instance uuid in plain text status. refs #1440
Tom Clegg [Mon, 25 Mar 2013 21:20:29 +0000 (14:20 -0700)]
show pipeline instance uuid in plain text status. refs #1440

11 years agoMerge branch 'master' of git.clinicalfuture.com:clients
Ward Vandewege [Mon, 25 Mar 2013 21:18:14 +0000 (17:18 -0400)]
Merge branch 'master' of git.clinicalfuture.com:clients

11 years agoMake subcommands singular. Slight layout improvement, too.
Ward Vandewege [Mon, 25 Mar 2013 21:17:25 +0000 (17:17 -0400)]
Make subcommands singular. Slight layout improvement, too.

11 years agocreate/update PipelineInstance while working. some code cleanup. refs #1440
Tom Clegg [Mon, 25 Mar 2013 19:59:24 +0000 (12:59 -0700)]
create/update PipelineInstance while working. some code cleanup. refs #1440

11 years agoadd pipeline_instances#index, fix #show to work with new-school pipelines. refs ...
Tom Clegg [Mon, 25 Mar 2013 21:13:16 +0000 (14:13 -0700)]
add pipeline_instances#index, fix #show to work with new-school pipelines. refs #1421 refs #1422

11 years agoFix up the discovery document - make sure we define 'items' in the the
Ward Vandewege [Mon, 25 Mar 2013 20:47:36 +0000 (16:47 -0400)]
Fix up the discovery document - make sure we define 'items' in the the
various ObjectList definitions.

Also really fix up the issue with ObjectList vs ObjectsList.

This makes the Python SDK happy.

11 years agoMake sure to pluralized object names in the List method as listed in the
Ward Vandewege [Mon, 25 Mar 2013 19:50:34 +0000 (15:50 -0400)]
Make sure to pluralized object names in the List method as listed in the
REST discovery document.

This makes the Python SDK happy.

11 years agoaccept pipeline template uuid in --template argument, improve docs. refs #1424
Tom Clegg [Mon, 25 Mar 2013 19:34:46 +0000 (12:34 -0700)]
accept pipeline template uuid in --template argument, improve docs. refs #1424

11 years agorename wh-pipeline to wh-run-pipeline-instance. refs #1424
Tom Clegg [Mon, 25 Mar 2013 19:10:58 +0000 (12:10 -0700)]
rename wh-pipeline to wh-run-pipeline-instance. refs #1424

11 years agotweak generic object display
Tom Clegg [Mon, 25 Mar 2013 18:44:06 +0000 (11:44 -0700)]
tweak generic object display

11 years agoadd /pipeline_templates index page. refs #1420
Tom Clegg [Mon, 25 Mar 2013 18:21:43 +0000 (11:21 -0700)]
add /pipeline_templates index page. refs #1420

11 years agofix rdoc. refs #1424
Tom Clegg [Mon, 25 Mar 2013 07:24:54 +0000 (00:24 -0700)]
fix rdoc. refs #1424

11 years agoadd wh-pipeline. refs #1424
Tom Clegg [Fri, 22 Mar 2013 21:42:09 +0000 (14:42 -0700)]
add wh-pipeline. refs #1424

11 years agoshow PGP huID tags. refs #1408 refs #1419
Tom Clegg [Fri, 22 Mar 2013 06:50:44 +0000 (23:50 -0700)]
show PGP huID tags. refs #1408 refs #1419

11 years agotweak table border
Tom Clegg [Fri, 22 Mar 2013 05:40:41 +0000 (22:40 -0700)]
tweak table border

11 years agoadd names and keep flags to groups -> collections list. refs #1408
Tom Clegg [Fri, 22 Mar 2013 04:18:08 +0000 (21:18 -0700)]
add names and keep flags to groups -> collections list. refs #1408

11 years agouse label instead of btn for labels on collections#show
Tom Clegg [Thu, 21 Mar 2013 18:52:00 +0000 (11:52 -0700)]
use label instead of btn for labels on collections#show

11 years agoadd Collections tab to groups#show page
Tom Clegg [Thu, 21 Mar 2013 17:14:34 +0000 (10:14 -0700)]
add Collections tab to groups#show page

11 years agoadd "usual orvos object details" tab on collections#show page
Tom Clegg [Thu, 21 Mar 2013 17:14:02 +0000 (10:14 -0700)]
add "usual orvos object details" tab on collections#show page

11 years agouse ORVOS_API_TOKEN environment variable in rails console
Tom Clegg [Thu, 21 Mar 2013 17:13:20 +0000 (10:13 -0700)]
use ORVOS_API_TOKEN environment variable in rails console

11 years agoadd Link to known-types list
Tom Clegg [Thu, 21 Mar 2013 15:59:14 +0000 (08:59 -0700)]
add Link to known-types list

11 years agoDo not assume
Ward Vandewege [Wed, 20 Mar 2013 19:52:14 +0000 (15:52 -0400)]
Do not assume

  session[:api_client_authorization_id]

exists when session[:user_id] is set.

11 years agofix list logic. refs #1405 refs #1406
Tom Clegg [Wed, 20 Mar 2013 02:56:17 +0000 (19:56 -0700)]
fix list logic. refs #1405 refs #1406

11 years agoadd delete method. refs #1406
Tom Clegg [Wed, 20 Mar 2013 02:50:10 +0000 (19:50 -0700)]
add delete method. refs #1406

11 years agoadd update method. refs #1406
Tom Clegg [Wed, 20 Mar 2013 02:46:11 +0000 (19:46 -0700)]
add update method. refs #1406

11 years agogeneralize output logic. refs #1405 refs #1406
Tom Clegg [Wed, 20 Mar 2013 02:42:55 +0000 (19:42 -0700)]
generalize output logic. refs #1405 refs #1406

11 years agoadd create method. refs #1406
Tom Clegg [Wed, 20 Mar 2013 02:34:56 +0000 (19:34 -0700)]
add create method. refs #1406

11 years agoimprove error checking
Tom Clegg [Wed, 20 Mar 2013 02:34:37 +0000 (19:34 -0700)]
improve error checking

11 years agohandle parameter types :object, :datetime, :text. refs #1405 refs #1406
Tom Clegg [Wed, 20 Mar 2013 02:34:01 +0000 (19:34 -0700)]
handle parameter types :object, :datetime, :text. refs #1405 refs #1406

11 years agoHandle errors more gracefully.
Ward Vandewege [Wed, 20 Mar 2013 01:38:48 +0000 (21:38 -0400)]
Handle errors more gracefully.

11 years agoDo not blow up when a default value for an argument is a boolean.
Ward Vandewege [Wed, 20 Mar 2013 01:25:28 +0000 (21:25 -0400)]
Do not blow up when a default value for an argument is a boolean.

11 years agoNow make sure we are really using the new rest file. refs #1406
Ward Vandewege [Wed, 20 Mar 2013 01:23:49 +0000 (21:23 -0400)]
Now make sure we are really using the new rest file. refs #1406

11 years agofix call to api_client.uuid when api_client is nil
Tom Clegg [Wed, 20 Mar 2013 01:08:26 +0000 (18:08 -0700)]
fix call to api_client.uuid when api_client is nil

11 years agoMerge branch 'master' of git.clinicalfuture.com:orvos-server
Ward Vandewege [Wed, 20 Mar 2013 01:07:24 +0000 (21:07 -0400)]
Merge branch 'master' of git.clinicalfuture.com:orvos-server

11 years agoMove auto-generated REST discovery document to the right path.
Ward Vandewege [Wed, 20 Mar 2013 01:06:44 +0000 (21:06 -0400)]
Move auto-generated REST discovery document to the right path.

refs #1406

11 years agouse new permission methods to check model transactions. refs #1415
Tom Clegg [Wed, 20 Mar 2013 00:38:35 +0000 (17:38 -0700)]
use new permission methods to check model transactions. refs #1415

11 years agoadd per-user and per-session default_owner. refs #1415
Tom Clegg [Wed, 20 Mar 2013 00:18:03 +0000 (17:18 -0700)]
add per-user and per-session default_owner. refs #1415

11 years agofix exception when tasks_summary[:running] == nil
Tom Clegg [Tue, 19 Mar 2013 21:07:10 +0000 (14:07 -0700)]
fix exception when tasks_summary[:running] == nil

11 years agorename job steps to job tasks. refs #1416
Tom Clegg [Tue, 19 Mar 2013 20:30:10 +0000 (13:30 -0700)]
rename job steps to job tasks. refs #1416